Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2666 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCCTTGCGGCCTCCGATCATCTTTCCCAAAGACCCTAATCTCTCGATGGTCTCTTTCCTCTTCCGAAATTCATCCTCTTATCCAAACAGACTCGCCATTGTTGATGCGGAATCCTCTGATTCCTTGTCGTATTCACAGCTTAAAGCCTCTGCAATTAGGGTCTCCAATGGCTTGCTCCAATTGGGTATCGAGAAAAATGACGTGGTGTTAATTTTTGCTCCAAATTCTGTTGAATTCTCCATTTGTTTCTTTGGAATTGTTGCCATTGGGGCTATTGTGACCACTTGTAATCCTGTCTACACGGTCTCTGAATTAACCACGCATGTTAGAGATGCTAAGCCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAACGATCTAAACGTCCCAACAGTGTTACTAGACCAGCAAATTCCTTCAGCAATCCACTCTTCGAAAATTTTCAGTTTCAATGATTTGATGAACATGGCTGGTGATAAATCTGGCTCTGAATTCCCAATTGTTGGAGTTAAGCAGAATGATACAGCTGCACTTCTGTATTCATCAGGAACAACAGGGACCAGTAAGGGTGTGATTCTGACTCACAGAAACTTCATAACATCTTCATTGATGATAACAATGGATCAGACGTTTAGGGGAGACGAAAATGTCATATTTCTGAACTTTTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCACAGCTGCAGAAAGGAAACACCATTGTCTCTATGCCAAAGTTTTACCTGGAGAAGGCCCTTTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCGAAGCAGAGTGTGGTGAAGAAATACAACCTTTCATCCGTGAAGCGTGTCGGTTCAGGGGCTGCACCTCTCGGGAAGGAATTAATGGAGGAATGTGCTAACAACATTCCCAGTTCTGTGGTTCTCCAGGGCTATGGTATGACTGAGACTTGTGGAATTGTTGCTTTGGAGAATCCAGCAGTTGGCAAACGAAATTCCGGTTCAGCTGGAACACTTGCCTCTGGTGTTGAGGCTCAAATAGTGAGCGTTGATACTTTGAAGCCCCTACCTCCTAATCAATATGGAGAGATACTGGTTCGAGGACCAAATATGATGCTCGGTTACTTCAACAATCCACAGGCTACCAAGCAAACTATTGATAAGTATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTTGAAGCACTGTTGGTTTCTCACCCTGAAATTCTAGATGCTGTTGTCATCCCCTACCCTGATGCTGAAGCTGGAGAAGTTCCAATTGCATATGTCGTTAGATCTACCAATAGTTCTTTGACTGAGGACGACATCCTCAAATTCATCGCCGATCAGGTTTCTCCATACAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTTCCCAAGTCTGTTTCTGGGAAAATCCTGAGGAGAGAACTCATTGAGAAAGTAAGAGCTAAAATTTAA 1632 43.63 MEKSGYGRDGIFRSLRPPIIFPKDPNLSMVSFLFRNSSSYPNRLAIVDAESSDSLSYSQLKASAIRVSNGLLQLGIEKNDVVLIFAPNSVEFSICFFGIVAIGAIVTTCNPVYTVSELTTHVRDAKPKLVISVAELWDKVNDLNVPTVLLDQQIPSAIHSSKIFSFNDLMNMAGDKSGSEFPIVGVKQNDTAALLYSSGTTGTSKGVILTHRNFITSSLMITMDQTFRGDENVIFLNFLPMFHVFGLACITYAQLQKGNTIVSMPKFYLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVKKYNLSSVKRVGSGAAPLGKELMEECANNIPSSVVLQGYGMTETCGIVALENPAVGKRNSGSAGTLASGVEAQIVSVDTLKPLPPNQYGEILVRGPNMMLGYFNNPQATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSTNSSLTEDDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43676320 43679961 - Tan0002775.1 Tan01g2666 740090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2666 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Tan01g2666 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Tan01g2666 543 SUPERFAMILY Acetyl-CoA synthetase-like 16 541 - -
Tan01g2666 543 CDD 4CL 21 535 - -
Tan01g2666 543 Gene3D - 441 542 IPR045851 -
Tan01g2666 543 Pfam AMP-binding enzyme 35 403 IPR000873 -
Tan01g2666 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Tan01g2666 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Tan01g2666 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 535 - GO:0016405(PANTHER)
Tan01g2666 543 Gene3D - 9 440 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2666 Tan-Chr1:43676320 Tan08g1857 Tan-Chr8:70812704 2.60E-193 dispersed
Tan01g2666 Tan-Chr1:43676320 Tan04g2483 Tan-Chr4:83652448 1.00E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2666 K01904 - csv:101220141 977.237