Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2687 ATGGAACATAGTTATGGGTTTGAACAACATGTTGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTTCCGCAGAATTATTTGCGAGTAGTGGGGGAATTATCCAGAAACTCTGATGAACAATTGAGTTTTCACAACTCGGAGAATTCGGAGCTTGATCTGGAACTTGTTCGAATTCAAAGTTTTAATAAGAAAGCGATTTTGCCTCATGACTTGTCTTCATTACCGGCAGAAATGATCAATTTCTCAAGAGATTCTAACGTTTTATCGGACCAAAGGAACATAATGTTGGGTCAAGAACTAGAAGACCCAGCTCAATGCAGTAGGCAAATTGTGGCAGATGCTTCGTTGGGTTCCTTTTCCAATTCTTTGTTGAAAGCCTCTGGTGAAATTGTAAATAATGATGGTGGTGATCATTATTGGAAAAGTTCTCAACAAACCTGTGAATGGGTGGTGAACTGTGGAAATAATTCTTTGGGAGGTGAAATGTTGAATGAGGAAGTAACTGATTCTACTGTATATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCAACCTCTTTTAGCAATCCATCCAACGAAACATTCAATCAGGACGGACAAAAGCGTATTGGAGGAGAATTGCATCTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACGTCAGCCTCTATTGGAACTCAGGACCTGGAGATGACATCCATTGTGCAGCATAATTTCACTGAAATTAACCAAACTGCTGCTTGTGAAGGCAGTGGAAATGAGCTAGCTCTTCTTCCCGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTGCTGGTTCTTGGACAGATAGATCTTTCTATAACTGCCGCAGCTGGATTGGTGAATTGGGTTCTATTGCAAGAAAAACTGATGAAGAATTGAGGACTTTTATGAGTGATTTCAATCCACAAGGTCTATCTCTGTCACTTTCCTCGAATCCGCCATCTAAATTGCCCACCACACAGTTTGAAGAACCAGAGGAATTACATGAAAATGTCACTGTGTTGAAAAATCCCCAAGAATCCAAAACAGTCAAATCTGAGAGTTTGTGCAGATTACCCAAGCCACCATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGACGTGATGGGGGCTCCTGTAAACACATACAGAAACACAGGTCCTCTTGGTCCCTTTACTGGTTATGCGACCATTTTAAAGAGTTCAAAATTCTTGAAGCCAGCCCAACTATTGTTGGATGAATTTTGTGGCTCGAATGGTCAAAAGTTTGTCCAATCATGTGACGTATTTGAGAAGACGTCTGGGGAAGTTGGTGCCTCAGTGGTCCATAGTGCATTTAGAAATGAGGTTGTTGTTAAGGAAAATAGTTCAAGTGCTGAAGCCTCTACGTTCTGCGGTTCGAATGAAACAAATATTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAGCCGGAGTATCAGCAAAAGAAAGCGAAACTTCTATATATGCTTGAGGAGGTTTGCAGAAGATACAAGCAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTTGAATCAGTAGCTGGTCTTAGTTCTGCCACCCCCTACATTTCCCTGGCGCTCAAGACAGTCTCAAGACACTTTCGGTGTCTAAAAAATGCCATCTCAGAACAATTGAAGTATCTGAGGAAGGTATTAGGTGAGGATTTGTCGTCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGATGCCAATTCGGCTAGGTTGAAATACGTGGAACAGAGCTTCCAAAAGCAAAAATCTGGCATTGTCAATATGGGATTCCTCGAATCCCAACATGTGTGGAGGCCGCAGAGAGGTTTGCCAGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCACAGACACAGATAAACACATGTTAGCCACTCAAACAGGCCTATCTCGTAACCAGGTGTCGAATTGGTTCATAAATGCACGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAATAACAAAAGCCATGGTACAAAAGATGGGAGTTCTACAATCGAAAACACAGCCGGTTGGACCAGTAGTGAACAACAGCGTCTTAAAAGCCATGGTGTTGTAAATGATATTGCCAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCGATAGAAATGGACTAGGCAGGAGTGACCAACAGTGGGATCGAGTCAAACAATCCAAATTGGACAACGGGATTCAGAACATGGAAGGAGAATTGATGGGGTTCATGCCATATCGGGCCAGCGCAGTCGAGGTTGGAGGGCTTGGATCTGTCTCTCTAACATTAGGCCTTCGCCACAGAGTCGAGAGTGCCCACCACCAACAGCAGCGACATCAATTGCAGCAACAAGATGACCAACTAATACACCACTATGGAGGCGAAATGATCCATGATTTTGTGGGGTAA 2517 43.42 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVVGELSRNSDEQLSFHNSENSELDLELVRIQSFNKKAILPHDLSSLPAEMINFSRDSNVLSDQRNIMLGQELEDPAQCSRQIVADASLGSFSNSLLKASGEIVNNDGGDHYWKSSQQTCEWVVNCGNNSLGGEMLNEEVTDSTVYSLKPTCIGFQTSTSFSNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIGTQDLEMTSIVQHNFTEINQTAACEGSGNELALLPVYRDQPNVLPYDSAGSWTDRSFYNCRSWIGELGSIARKTDEELRTFMSDFNPQGLSLSLSSNPPSKLPTTQFEEPEELHENVTVLKNPQESKTVKSESLCRLPKPPSIGNKNYGKSLQDVMGAPVNTYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGQKFVQSCDVFEKTSGEVGASVVHSAFRNEVVVKENSSSAEASTFCGSNETNISGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRCLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYVEQSFQKQKSGIVNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGTKDGSSTIENTAGWTSSEQQRLKSHGVVNDIASHHLQCLGVDSSSGDRNGLGRSDQQWDRVKQSKLDNGIQNMEGELMGFMPYRASAVEVGGLGSVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIHHYGGEMIHDFVG 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45138694 45145918 + Tan0022602.2 Tan01g2687 740111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2687 838 Pfam Associated with HOX 405 558 IPR006563 -
Tan01g2687 838 MobiDBLite consensus disorder prediction 693 719 - -
Tan01g2687 838 SUPERFAMILY Homeodomain-like 619 683 IPR009057 -
Tan01g2687 838 CDD homeodomain 617 678 IPR001356 GO:0003677(InterPro)
Tan01g2687 838 SMART HOX_1 617 681 IPR001356 GO:0003677(InterPro)
Tan01g2687 838 Pfam Homeobox KN domain 634 673 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2687 838 ProSiteProfiles 'Homeobox' domain profile. 614 677 IPR001356 GO:0003677(InterPro)
Tan01g2687 838 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 327 715 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g2687 838 SMART prehox3 400 559 IPR006563 -
Tan01g2687 838 FunFam BEL1-like homeodomain protein 9 620 682 - -
Tan01g2687 838 Gene3D - 620 682 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2687 Tan-Chr1:45138694 Tan08g2046 Tan-Chr8:72568008 7.60E-67 dispersed
Tan01g2686 Tan-Chr1:45138694 Tan01g2687 Tan-Chr1:45138694 0.00E+00 tandem
Tan01g2687 Tan-Chr1:45138694 Tan01g2688 Tan-Chr1:45138694 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26463 PF07526 POX 1.40E-43 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2687 - - - 0.0