Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2750 ATGGCAGAGAGTTGGGATGGAAGTTATGACGACTCTGGAAGCGTATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAGTCCATTTATGATGCGTTTGTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATTGAAAGTGGCCAAACTTTTGAACGTGCGGCCATTGAAAAGTGGTTCAGGGAATGCAGGGAGAGTAGAAGGAGGCCAATCTGTCCAATGACACTAAAAGAATTAAAAACCACGGATCTGAATCCTAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACTGCTAGGAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAATGAAACTTTGGGATCTTTGAAGTATGTCCAGCATGTCTGCCAAAAGGGTTTGTCAAGGCACATAGCACGAAATGCTGGGCTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTCGCATTGTGGTGCAAGAAGACAATGAGTGTAAGGAAATGTTAGCCGAGGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGCCATGAACGTTCAAAAGAAAAGGAGGAAGCTGTAGCTTTGCTCTATGAGCTTTCCAAGTCTGAAGTCTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCCATTCTTATATTAGTCGGAATGTCGAGCAGCAAATCTGAGAACATCTCCACGATTGAAAATGCTGATAGAACATTAGAGAACCTGGAGAAGTGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAAATTCTTCAAGGTGCGTACATGATCTTCATTAGTAGATTTATTATTAGAATTCATTTGCATATTACTGCTTGTTATATTCTAGATCACTACGGAATTTCTTTGAATGACAGTAGGCAAGGGAAATTAAGTTACCTGGTGAATGAGAGGATCGTTCACAACAAAATCCCTTACTCTGAAAACTACTTCCAGCGCTTGCAGGATCATGGAGCATTTTACTCTCATTTATGGAAGGGTTCCTTCCCAAAGAAAGTTAAAATTTTCATTTGGGAGCTTACCCATGGTAGCATTAGCACTGCTAATGTACTTCAAAAAAAGGCCCTCGGGCTTGAAATCTTTTCATGTTTTCTTTTCAATTACTTCATCCTTCATGGGATTGTTACAGGTTCACCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAGCTCTTTGTGGCTCAGTCTGTGGGGTCATCTCTAATTAATATCATGAAAAGTGGCGATAGGCAGTCGAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCGTCTTTTGAGGCTAGTGCAAGAGTTTTGGTACAGGAAGGGATACTTCCGCCTCTCGTTAAGGATCTTTTCACAGTTGGTTCGAATCAAATTCCCATGCGATTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTTGATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTTTCGGAAGATACTGTCCAGAACCTGCTACAACTCATCAGCAATAACGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTTAACCATTTTGAGTATTGTCAATGCCATTAGAAACTCTGGTGCAATGATCAGCCTAGTTCAATTTATTGAGGCCCCACAACTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCGGAACATCTCCCCGCACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGCTCAGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTTTCCAGGCAGATGCTTGATGAAGAAGCTTTTGAGCTGGTCTACTTTAGAGTTGTTAAACTCCGCCAAGGGGAGACTAGAGGCAGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCAAATTCTTGCGAGGATTACATTTATATTGGCTGATGAGCCTGATGCTCTTGCATTTTGTCGCAGTCACAATCTTGCTGCTTTATTCATCGATCTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTCTAGAATCCAAGTCTTTGACTCAGTTACCTGAGTTTCCGACACCTGGATTTTGTGCCTCCATATTTCCATGCTTCAGCAGACCACCGGTACTAATAGGGTTGTGTCCTCTCCACCGGGGTACATGCTCTTTGAGGGAAAGTTTTTGCCTTGTGGTGGAAGGTCAGGCATTGAACAGATTGGTAGCCCTTTTAGACCACACAAGTGAGAAGGTCGTCGAGGCAGCGCTTGCGGCACTATCTACTATGTTGGATGATGGAGTTGATGTTGCGCAGGGGGTGAACATTTTGCACAACGCAGGTGCGGTTCAGCCTATATTTAATGTGCTGCTTGAAAACCGTACAGAGAATCTGATGAGAAGGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGAGGACATCGCAATCGAATTTTCAAATAATCCAAACGTGAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACTACCAAACCAGGCAAATTGCTGAGCGTGCTTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAATAATTTGGGATAA 2829 43.05 MAESWDGSYDDSGSVSDESSYYARLHIESIYDAFVCPLTKQVMRDPVTIESGQTFERAAIEKWFRECRESRRRPICPMTLKELKTTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVVQEDNECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEVLCEKIGSVNGAILILVGMSSSKSENISTIENADRTLENLEKCENNIRQMAEYGRLRPLLTQILQGAYMIFISRFIIRIHLHITACYILDHYGISLNDSRQGKLSYLVNERIVHNKIPYSENYFQRLQDHGAFYSHLWKGSFPKKVKIFIWELTHGSISTANVLQKKALGLEIFSCFLFNYFILHGIVTGSPETKHSMAAHLGELVLNNDVKLFVAQSVGSSLINIMKSGDRQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNQIPMRLKEVSATILANVVSSGCDFDSIPVEPNNQTTLVSEDTVQNLLQLISNNGPAIECKLLQVLVGLTSSPLTILSIVNAIRNSGAMISLVQFIEAPQLDLRVSAIKLLRNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEEAFELVYFRVVKLRQGETRGSRFLTPFLEGLVQILARITFILADEPDALAFCRSHNLAALFIDLLQSNGLDNVQMVSAMALENLSLESKSLTQLPEFPTPGFCASIFPCFSRPPVLIGLCPLHRGTCSLRESFCLVVEGQALNRLVALLDHTSEKVVEAALAALSTMLDDGVDVAQGVNILHNAGAVQPIFNVLLENRTENLMRRAVWTVERLLRTEDIAIEFSNNPNVSTALVDAFQHGDYQTRQIAERALRHVDKLPNFSNIFPNPNNLG 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49743608 49769718 + Tan0022008.1 Tan01g2750 740174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2750 942 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 113 IPR013083 -
Tan01g2750 942 Gene3D - 114 296 IPR011989 -
Tan01g2750 942 Pfam U-box domain 32 106 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g2750 942 SUPERFAMILY ARM repeat 129 621 IPR016024 -
Tan01g2750 942 SMART Ubox_2 33 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g2750 942 SUPERFAMILY ARM repeat 577 927 IPR016024 -
Tan01g2750 942 Gene3D - 700 933 IPR011989 -
Tan01g2750 942 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 407 935 IPR052608 -
Tan01g2750 942 CDD RING-Ubox_PUB 31 88 IPR045210 -
Tan01g2750 942 Gene3D - 390 681 IPR011989 -
Tan01g2750 942 Coils Coil 253 276 - -
Tan01g2750 942 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g2750 942 SMART arm_5 715 756 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SMART arm_5 139 179 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SMART arm_5 571 612 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SMART arm_5 471 516 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SMART arm_5 431 470 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SMART arm_5 800 839 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SMART arm_5 181 221 IPR000225 GO:0005515(InterPro)
Tan01g2750 942 SUPERFAMILY RING/U-box 19 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2750 Tan-Chr1:49743608 Tan04g0950 Tan-Chr4:8352775 2.00E-100 dispersed
Tan01g2750 Tan-Chr1:49743608 Tan01g2751 Tan-Chr1:49743608 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2750 - - - 0.0