Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2751 ATGAGTGAAATGTTAGCCGAGGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGCCATGAACGTTCAAAAGAAAAGGAGGAAGCTGTAGCTTTGCTCTATGAGCTTTCCAAGTCTGAAGTCTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCCATTCTTATATTAGTCGGAATGTCGAGCAGCAAATCTGAGAACATCTCCACGATTGAAAATGCTGATAGAACATTAGAGAACCTGGAGAAGTGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAAATTCTTCAAGGTGCGTACATGATCTTCATTAGTAGATTTATTATTAGAATTCATTTGCATATTACTGCTTGTTATATTCTAGATCACTACGGAATTTCTTTGAATGACAGTAGGCAAGGGAAATTAAGTTACCTGGTGAATGAGAGGATCGTTCACAACAAAATCCCTTACTCTGAAAACTACTTCCAGCGCTTGCAGGATCATGGAGCATTTTACTCTCATTTATGGAAGGGTTCCTTCCCAAAGAAAGTTAAAATTTTCATTTGGGAGCTTACCCATGGTAGCATTAGCACTGCTAATGTACTTCAAAAAAAGGCCCTCGGGCTTGAAATCTTTTCATGTTTTCTTTTCAATTACTTCATCCTTCATGGGATTGTTACAGGTTCACCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAGCTCTTTGTGGCTCAGTCTGTGGGGTCATCTCTAATTAATATCATGAAAAGTGGCGATAGGCAGTCGAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCGTCTTTTGAGGCTAGTGCAAGAGTTTTGGTACAGGAAGGGATACTTCCGCCTCTCGTTAAGGATCTTTTCACAGTTGGTTCGAATCAAATTCCCATGCGATTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTTGATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTTTCGGAAGATACTGTCCAGAACCTGCTACAACTCATCAGCAATAACGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTTAACCATTTTGAGTATTGTCAATGCCATTAGAAACTCTGGTGCAATGATCAGCCTAGTTCAATTTATTGAGGCCCCACAACTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCGGAACATCTCCCCGCACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGCTCAGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTTTCCAGGCAGATGCTTGATGAAGAAGCTTTTGAGCTGGTCTACTTTAGAGTTGTTAAACTCCGCCAAGGGGAGACTAGAGGCAGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCAAATTCTTGCGAGGATTACATTTATATTGGCTGATGAGCCTGATGCTCTTGCATTTTGTCGCAGTCACAATCTTGCTGCTTTATTCATCGATCTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTCTAGAATCCAAGTCTTTGACTCAGTTACCTGAGTTTCCGACACCTGGATTTTGTGCCTCCATATTTCCATGCTTCAGCAGACCACCGGTACTAATAGGGTTGTGTCCTCTCCACCGGGGTACATGCTCTTTGAGGGAAAGTTTTTGCCTTGTGGTGGAAGGTCAGGCATTGAACAGATTGGTAGCCCTTTTAGACCACACAAGTGAGAAGGTCGTCGAGGCAGCGCTTGCGGCACTATCTACTATGTTGGATGATGGAGTTGATGTTGCGCAGGGGGTGAACATTTTGCACAACGCAGGTGCGGTTCAGCCTATATTTAATGTGCTGCTTGAAAACCGTACAGAGAATCTGATGAGAAGGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGAGGACATCGCAATCGAATTTTCAAATAATCCAAACGTGAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACTACCAAACCAGGCAAATTGCTGAGCGTGCTTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAATAATTTGGGATAA 2280 42.89 MSEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEVLCEKIGSVNGAILILVGMSSSKSENISTIENADRTLENLEKCENNIRQMAEYGRLRPLLTQILQGAYMIFISRFIIRIHLHITACYILDHYGISLNDSRQGKLSYLVNERIVHNKIPYSENYFQRLQDHGAFYSHLWKGSFPKKVKIFIWELTHGSISTANVLQKKALGLEIFSCFLFNYFILHGIVTGSPETKHSMAAHLGELVLNNDVKLFVAQSVGSSLINIMKSGDRQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNQIPMRLKEVSATILANVVSSGCDFDSIPVEPNNQTTLVSEDTVQNLLQLISNNGPAIECKLLQVLVGLTSSPLTILSIVNAIRNSGAMISLVQFIEAPQLDLRVSAIKLLRNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEEAFELVYFRVVKLRQGETRGSRFLTPFLEGLVQILARITFILADEPDALAFCRSHNLAALFIDLLQSNGLDNVQMVSAMALENLSLESKSLTQLPEFPTPGFCASIFPCFSRPPVLIGLCPLHRGTCSLRESFCLVVEGQALNRLVALLDHTSEKVVEAALAALSTMLDDGVDVAQGVNILHNAGAVQPIFNVLLENRTENLMRRAVWTVERLLRTEDIAIEFSNNPNVSTALVDAFQHGDYQTRQIAERALRHVDKLPNFSNIFPNPNNLG 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49743608 49769718 + Tan0022008.2 Tan01g2751 740175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2751 759 Gene3D - 206 498 IPR011989 -
Tan01g2751 759 Gene3D - 516 750 IPR011989 -
Tan01g2751 759 SMART arm_5 248 287 IPR000225 GO:0005515(InterPro)
Tan01g2751 759 SMART arm_5 388 429 IPR000225 GO:0005515(InterPro)
Tan01g2751 759 SMART arm_5 617 656 IPR000225 GO:0005515(InterPro)
Tan01g2751 759 SMART arm_5 532 573 IPR000225 GO:0005515(InterPro)
Tan01g2751 759 SMART arm_5 288 333 IPR000225 GO:0005515(InterPro)
Tan01g2751 759 SUPERFAMILY ARM repeat 5 106 IPR016024 -
Tan01g2751 759 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 224 752 IPR052608 -
Tan01g2751 759 Gene3D - 1 128 IPR011989 -
Tan01g2751 759 Coils Coil 70 93 - -
Tan01g2751 759 SUPERFAMILY ARM repeat 225 741 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2751 Tan-Chr1:49743608 Tan04g0950 Tan-Chr4:8352775 3.60E-68 dispersed
Tan01g2750 Tan-Chr1:49743608 Tan01g2751 Tan-Chr1:49743608 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2751 - - - 0.0