Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2760 ATGTCGGGATCTGAGACTGGTGTGATGACGAGTAGGGAACCCTTCAGCGTCGGCGTCCAGAATAGCTCCTTACAGTCGCAGGCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCTGATGGCACAGCCGTCTACAAGCCTGTCACTCCTTCAACCTCACCGTCGTACCAGTCCTCCATGGCCGGAGTTTCTGGTAATGCCGGAATGGAGGGATCGGCTGGTGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAAGAAGAGGGGCAGACCAAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTAGGTTCTGGGCCGCCATCTGGGACTGGAGGTTTTTCTCCTTCAACTATGGCTAATCCTGCTTCAGAAGGTTTGGCCTCATCACCACCAAATTCATGGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAAGTGGAAGCTTTGGGATCGGCTGGTATTGGATTCACTCCCCATGTTATCGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGGGCTATTTGTATCCTCTCTGCAAATGGAGCAATATCAAATGTGACTCTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGGTTTGAAATTTTGTCACTTTCAGGTTCATTTCTTCTGTCTGAAAATGGTGGGCAGAGAAGCAGAACTGGTGGTTTAAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTGGGTGGCGGTGTGGCGGGTCTTCTCACGGCTGCATCTCCTGTTCAGGTGGTTGTGGGAAGTTTCATAGTCGACAGCAACAAGGAACCGAAGTCAGCCCGCCAAACCGAACCTGTTGCTGCCTCACAAATGCTAAACCCAGTCGGGTTTGGTCACTTAACAGGAGGAGTCAGTAGTCCGTCTCATGGGACACTAAGCGAGTCTTCCGGTGACGGCACAGGCAGCCCCCTTAACAACACCTCTGGAGCTTGCAACAACAGCAACCATCCACAGGGCATGTCTGGCATGCCATGGAAGTAA 1092 50.82 MSGSETGVMTSREPFSVGVQNSSLQSQAAAQNMRLAFSADGTAVYKPVTPSTSPSYQSSMAGVSGNAGMEGSAGGGSMLPHGFNINSVGSEQIKKKRGRPRKYGPDGSMALALGSGPPSGTGGFSPSTMANPASEGLASSPPNSWKKTKGRPPGSKKKQQVEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIVDSNKEPKSARQTEPVAASQMLNPVGFGHLTGGVSSPSHGTLSESSGDGTGSPLNNTSGACNNSNHPQGMSGMPWK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50275909 50279909 - Tan0014033.1 Tan01g2760 740184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2760 363 MobiDBLite consensus disorder prediction 90 162 - -
Tan01g2760 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 340 IPR039605 GO:0003680(InterPro)
Tan01g2760 363 MobiDBLite consensus disorder prediction 321 357 - -
Tan01g2760 363 CDD DUF296 172 286 IPR005175 -
Tan01g2760 363 MobiDBLite consensus disorder prediction 120 146 - -
Tan01g2760 363 Gene3D - 173 309 - -
Tan01g2760 363 FunFam AT-hook motif nuclear-localized protein 1-like 173 303 - -
Tan01g2760 363 ProSiteProfiles PPC domain profile profile. 167 307 IPR005175 -
Tan01g2760 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 286 IPR005175 -
Tan01g2760 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 287 - -
Tan01g2760 363 MobiDBLite consensus disorder prediction 310 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2760 Tan-Chr1:50275909 Tan01g5155 Tan-Chr1:116716138 9.10E-102 dispersed
Tan01g2760 Tan-Chr1:50275909 Tan01g2761 Tan-Chr1:50275909 2.80E-199 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2760 - - - 0.0