Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2783 ATGTCAACAAGTAGACCCAGCCAGTCCACGAACACAGGAGGATCATCCTCCTCCTCCTCACAATCAAGACATAGCGCCAGAATCCTTACTCAAACCTCCATAGACGCAAAGCTCCACTCCCACTTCGAACAATCTGGTTCTTCATTCGACTACTCTGCTTCAATTCATCTCACAACCAACCCACCAACAACCACCACCACCACCGCCTATCTCCACCACATCCAAAAATCCAACCTCATTCAGCCCTTCGGCTGCCTCTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCAGCCAAAATGCCCCTGAATTCCTCACCACCGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCTCTCCTCACCTTCGGTACCGACCTCCGATCCATCTTCACTGCCCCCACTGCCACCGCCCTCCTCAAGGCCCTAGCCTTCCCGGACGTCACCCTCCTCAACCCCGTCCTCGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACTGGCAGCCTCATCATCGACTTCGAGCCCGTCAAGCCTGATGAAGTCCCCATCACCGCAGCCGGGGCTCTGCAGTCGTATAAACTCGCAGCGAAAGCCATCACTCGGCTCCAAGCTCTCCCCAGCGGGAGCATGGCGAGGCTTTGTGACACCATGGTTCAAGAGGTGTTTGAGCTGACAGGGTATGATAGAGTTATGGCTTATAAATTCCATGATGATGATCATGGGGAGGTTTTCTCAGAAGTTACCAAGCCTGGGCTTGAGCCTTATCTGGGATTGCATTATCCAGCCACTGACATTCCTCAAGCTGCAAGGTTTTTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAAAGCCAAACATGTGAAGGTGATTCAAGATCCAAATCTTGAGTTTGATTTGACATTATGTGGGTCCACTTTGAGAGCTCCTCATAGTTGCCATTTGCAGTATATGGAGAATATGGAGTCTATAGCTTCTTTGGTTATGGCCATTGTGGTGAATGAGGAGGATATTGAAGAGGAATTTGACCATAATGATCATAAAAATGATGTGAAAAAACATAAGAGGAAAAAATTGTGGGGTTTGGTGGTTTGTCATAATACAACTCCTAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTGGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAATTGGAGAGTCAGATTTTGGAGAAGAATATTTTGAGGACTCAAACACTTTTGTGTGACATGTTAATGCGTGATGCTCCTTTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTGTACAACAATAAGGTATGGAGATTGGGGATAACTCCTACTGATTTTCACCTTCATGACATTGCTTCATGGATTTTGGACTGTCATGTGGATTCTACTGGTTTGAGTACTGATAGCCTGTATGATGCCGGGTACCCCGGTGCGCTTGCACTAGGCGACGCCGTGTGTGGGATGGCTGCCGTGAGGATAGCTTCCCACGACATGATTTTCTGGTTCCGATCGCACACTGCGTCGGAGATCCGGTGGGGCGGGGCGAAGCATGAGGCTGGTGAGAAGGATGATGGAAGGAAAATGCATCCTAGGTCATCTTTTAAGGCTTTTCTTGAAGTGGTGAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATCCATTCTTTGCAGCTTATACTAAGAAACACTTTTAAAGATACAGATAATAATATGAGTAGTGAGATGAATAGAAATTCAATACAATCAACACTTAGTGATCTGAAGATTGATGGGAGGGAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTGGATGGGCTAGTGAATGGATGGAACTCAAAAATTGCTGAATTGACTGGACTCTCAGTTGACAAAGCTATTGGCAAGCATTTGCTCACCTTGGTGGAAGATTCTTCTGTACAAACTGTCAGCAAGATGTTGTTCTTGGCATTGCAAGGGGAAGAGGAGAAAAACGTGGAATTTGAGATAAAAACACAAGGCAACAACTCAAAGAAGGTGGAATCAAGCGCCATCAGCTTAGTAGTAAATGCATGCGCAAGCAAGGACTTAGAAGAAAACGTAGTGGGAGTTTGCTTGGTAGCACAAGACATAACACATGAAAAAAAAGTGATGGACAAATTCACAAAACTAGAAGGCGATTACAAAGCCATAGTCCAAAACCCCAACCCACTAATCCCTCCAATATTCGGACTGGACGAATTTGGTTGGTGCACCGAGTGGAACTTAGCAATGACAAATCTAACCGGATGCTCACGCGAACAAGTCCTCAACAAGATGCTTTTGGGTGAAGTCTTCGGCTCCCAAACCCAAAACTCATGCTGCCATTTAAAGAACCAAGAAGCCTTCGTCAATCTTGGGATTGTCTTGAACAATGCCATGAGCGGCCAAGACCCTGAAAAGAATATTCCATTTGGCTTCTTTGCTAGAAATGGGATGTTTGTCGAGTGTCTTCTTTGTGTTAATAAGATTTTAGATAGAGACGGTGGTGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTACCCAAGAGCTCCAACAGGCTTTGAATGTTCAGAAGTTGTGTCAGAGAATTGCTTTGAAGAGATTGAAGGCTTTGGGATATGTTAAGAGGCAGATTCGAAATCCTCTTTCTGGGATTGTTTTTTCTAGGAAAATGATGGAGCGGACTGAGTTGGGAGTTGAACAAAAGCAGCTTTTGATTCATAGTGCTCATTGTCAAAGCCAGATCTCTAAGCTTATTGATGAGTCCTCCGATGATCTTGATAGGATCATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATCAGTCAAGTCATGATGAAGAGCAAAGGGAAAGGAATCCAAATAGTAAATGAGGTTGATGAAGAGATCATGTCTGAAACTCTATATGGAGACAATTTGAGACTTCAACAAATCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTATGCTTTCAACAAATGTGACTAAGGATCATTTGGGAAAGTCAGTACATCTTGTGCATGTGGAGTTCAGGATAACATATGTAGGTGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATGAAGATGCATCTGAAGAAGGTTTTAGCCTTCTCATAAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGGAAAGTCAACCTTCATTATAACTCTTGAGCTTGCTGCACCTCATTAG 3411 44.39 MSTSRPSQSTNTGGSSSSSSQSRHSARILTQTSIDAKLHSHFEQSGSSFDYSASIHLTTNPPTTTTTTAYLHHIQKSNLIQPFGCLLALHPTTLKLIAFSQNAPEFLTTVSHTVPTISDRPLLTFGTDLRSIFTAPTATALLKALAFPDVTLLNPVLVHSKSSGKPFYAILHRVTGSLIIDFEPVKPDEVPITAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMESIASLVMAIVVNEEDIEEEFDHNDHKNDVKKHKRKKLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLHDIASWILDCHVDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRIASHDMIFWFRSHTASEIRWGGAKHEAGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDNNMSSEMNRNSIQSTLSDLKIDGREELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKHLLTLVEDSSVQTVSKMLFLALQGEEEKNVEFEIKTQGNNSKKVESSAISLVVNACASKDLEENVVGVCLVAQDITHEKKVMDKFTKLEGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTNLTGCSREQVLNKMLLGEVFGSQTQNSCCHLKNQEAFVNLGIVLNNAMSGQDPEKNIPFGFFARNGMFVECLLCVNKILDRDGGVIGVFCFLQLATQELQQALNVQKLCQRIALKRLKALGYVKRQIRNPLSGIVFSRKMMERTELGVEQKQLLIHSAHCQSQISKLIDESSDDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIVNEVDEEIMSETLYGDNLRLQQIMADFLLISVNYAPTGGQLMLSTNVTKDHLGKSVHLVHVEFRITYVGGGIPESLLNEMFGNDEDASEEGFSLLISRKLVKLMNGDVRYVREAGKSTFIITLELAAPH 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52546997 52553027 - Tan0000082.1 Tan01g2783 740207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2783 1136 PIRSF Phytochrome_conventional 4 1136 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Tan01g2783 1136 SUPERFAMILY GAF domain-like 414 591 - -
Tan01g2783 1136 NCBIfam PAS domain S-box protein 632 751 IPR000014 -
Tan01g2783 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 631 740 IPR035965 -
Tan01g2783 1136 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Tan01g2783 1136 CDD PAS 636 745 IPR000014 -
Tan01g2783 1136 ProSiteProfiles Histidine kinase domain profile. 915 1134 IPR005467 -
Tan01g2783 1136 Gene3D PAS domain 774 894 - -
Tan01g2783 1136 Gene3D PAS domain 73 321 - -
Tan01g2783 1136 CDD HATPase_Phy-like 1021 1132 IPR044767 -
Tan01g2783 1136 SUPERFAMILY GAF domain-like 198 403 - -
Tan01g2783 1136 Gene3D - 974 1134 IPR036890 -
Tan01g2783 1136 Pfam Phytochrome region 419 593 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 967 1131 IPR036890 -
Tan01g2783 1136 Pfam PAS fold 761 886 IPR013767 GO:0006355(InterPro)
Tan01g2783 1136 Pfam PAS fold 628 745 IPR013767 GO:0006355(InterPro)
Tan01g2783 1136 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1022 1132 IPR003594 -
Tan01g2783 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 775 884 IPR035965 -
Tan01g2783 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 188 IPR035965 -
Tan01g2783 1136 MobiDBLite consensus disorder prediction 1 26 - -
Tan01g2783 1136 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 396 IPR016132 -
Tan01g2783 1136 Gene3D PAS domain 624 750 - -
Tan01g2783 1136 Gene3D - 199 567 IPR029016 -
Tan01g2783 1136 SMART HKATPase_4 1022 1134 IPR003594 -
Tan01g2783 1136 ProSiteProfiles PAS repeat profile. 625 695 IPR000014 -
Tan01g2783 1136 CDD HisKA 919 978 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 521 540 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 628 644 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 647 662 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 554 572 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 743 763 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 723 740 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 436 456 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 ProSiteProfiles PAS repeat profile. 761 813 IPR000014 -
Tan01g2783 1136 FunFam Phytochrome 411 545 - -
Tan01g2783 1136 CDD PAS 772 886 IPR000014 -
Tan01g2783 1136 Gene3D - 411 584 IPR043150 -
Tan01g2783 1136 Pfam GAF domain 220 405 IPR003018 GO:0005515(InterPro)
Tan01g2783 1136 PANTHER OS08G0260000 PROTEIN 1 1010 - -
Tan01g2783 1136 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Tan01g2783 1136 Coils Coil 403 423 - -
Tan01g2783 1136 SMART pas_2 760 829 IPR000014 -
Tan01g2783 1136 SMART pas_2 627 693 IPR000014 -
Tan01g2783 1136 SMART gaf_1 218 416 IPR003018 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2783 K12120 - - csv:101219585 1873.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2783 Tan-Chr1:52546997 Tan02g0487 Tan-Chr2:4451723 0.00E+00 dispersed
Tan01g2783 Tan-Chr1:52546997 Tan01g2789 Tan-Chr1:53130787 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2314 . 28 1219 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1464.5
Tan01g2315 . 28 1152 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1345.1
Tan11g1724 . 23 986 Histidine Kinase Gene Family AT2G01830 73.0 0.0e+00 1339.3
Tan04g1702 . 20 1003 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1338.9
Tan06g1521 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan06g1522 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan02g0457 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan02g0458 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan05g0968 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0969 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0970 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan01g3520 . 1 998 Histidine Kinase Gene Family AT5G10720 58.3 6.8e-295 1010.7
Tan01g3521 . 1 961 Histidine Kinase Gene Family AT5G10720 57.5 1.0e-274 943.7
Tan01g2789 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.1 0.0e+00 1852.0
Tan01g2783 . 1 1134 Histidine Kinase Gene Family AT1G09570 72.0 0.0e+00 1645.9
Tan02g0487 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan02g0490 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan10g1077 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.3
Tan02g0489 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0488 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0491 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0492 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0493 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan10g1077 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Tan05g2567 . 31 1042 Histidine Kinase Gene Family AT2G18790 61.5 0.0e+00 1263.8
Tan01g2789 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1090.9
Tan02g0487 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan02g0490 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan01g2783 . 20 1071 Histidine Kinase Gene Family AT2G18790 51.5 1.9e-310 1062.8
Tan02g0489 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0488 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0487 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0490 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0489 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0488 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0491 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0492 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0493 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan10g1077 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.6 0.0e+00 1147.5
Tan01g2789 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Tan10g1077 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1708.0
Tan05g2567 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.1 0.0e+00 1303.9
Tan01g2789 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1138.3
Tan02g0487 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0490 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0489 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0488 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan05g2567 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1385.5
Tan10g1077 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1275.0
Tan02g0491 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0492 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0493 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56