Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2783 ATGTCAACAAGTAGACCCAGCCAGTCCACGAACACAGGAGGATCATCCTCCTCCTCCTCACAATCAAGACATAGCGCCAGAATCCTTACTCAAACCTCCATAGACGCAAAGCTCCACTCCCACTTCGAACAATCTGGTTCTTCATTCGACTACTCTGCTTCAATTCATCTCACAACCAACCCACCAACAACCACCACCACCACCGCCTATCTCCACCACATCCAAAAATCCAACCTCATTCAGCCCTTCGGCTGCCTCTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCAGCCAAAATGCCCCTGAATTCCTCACCACCGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCTCTCCTCACCTTCGGTACCGACCTCCGATCCATCTTCACTGCCCCCACTGCCACCGCCCTCCTCAAGGCCCTAGCCTTCCCGGACGTCACCCTCCTCAACCCCGTCCTCGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACTGGCAGCCTCATCATCGACTTCGAGCCCGTCAAGCCTGATGAAGTCCCCATCACCGCAGCCGGGGCTCTGCAGTCGTATAAACTCGCAGCGAAAGCCATCACTCGGCTCCAAGCTCTCCCCAGCGGGAGCATGGCGAGGCTTTGTGACACCATGGTTCAAGAGGTGTTTGAGCTGACAGGGTATGATAGAGTTATGGCTTATAAATTCCATGATGATGATCATGGGGAGGTTTTCTCAGAAGTTACCAAGCCTGGGCTTGAGCCTTATCTGGGATTGCATTATCCAGCCACTGACATTCCTCAAGCTGCAAGGTTTTTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAAAGCCAAACATGTGAAGGTGATTCAAGATCCAAATCTTGAGTTTGATTTGACATTATGTGGGTCCACTTTGAGAGCTCCTCATAGTTGCCATTTGCAGTATATGGAGAATATGGAGTCTATAGCTTCTTTGGTTATGGCCATTGTGGTGAATGAGGAGGATATTGAAGAGGAATTTGACCATAATGATCATAAAAATGATGTGAAAAAACATAAGAGGAAAAAATTGTGGGGTTTGGTGGTTTGTCATAATACAACTCCTAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTGGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAATTGGAGAGTCAGATTTTGGAGAAGAATATTTTGAGGACTCAAACACTTTTGTGTGACATGTTAATGCGTGATGCTCCTTTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTGTACAACAATAAGGTATGGAGATTGGGGATAACTCCTACTGATTTTCACCTTCATGACATTGCTTCATGGATTTTGGACTGTCATGTGGATTCTACTGGTTTGAGTACTGATAGCCTGTATGATGCCGGGTACCCCGGTGCGCTTGCACTAGGCGACGCCGTGTGTGGGATGGCTGCCGTGAGGATAGCTTCCCACGACATGATTTTCTGGTTCCGATCGCACACTGCGTCGGAGATCCGGTGGGGCGGGGCGAAGCATGAGGCTGGTGAGAAGGATGATGGAAGGAAAATGCATCCTAGGTCATCTTTTAAGGCTTTTCTTGAAGTGGTGAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATCCATTCTTTGCAGCTTATACTAAGAAACACTTTTAAAGATACAGATAATAATATGAGTAGTGAGATGAATAGAAATTCAATACAATCAACACTTAGTGATCTGAAGATTGATGGGAGGGAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTGGATGGGCTAGTGAATGGATGGAACTCAAAAATTGCTGAATTGACTGGACTCTCAGTTGACAAAGCTATTGGCAAGCATTTGCTCACCTTGGTGGAAGATTCTTCTGTACAAACTGTCAGCAAGATGTTGTTCTTGGCATTGCAAGGGGAAGAGGAGAAAAACGTGGAATTTGAGATAAAAACACAAGGCAACAACTCAAAGAAGGTGGAATCAAGCGCCATCAGCTTAGTAGTAAATGCATGCGCAAGCAAGGACTTAGAAGAAAACGTAGTGGGAGTTTGCTTGGTAGCACAAGACATAACACATGAAAAAAAAGTGATGGACAAATTCACAAAACTAGAAGGCGATTACAAAGCCATAGTCCAAAACCCCAACCCACTAATCCCTCCAATATTCGGACTGGACGAATTTGGTTGGTGCACCGAGTGGAACTTAGCAATGACAAATCTAACCGGATGCTCACGCGAACAAGTCCTCAACAAGATGCTTTTGGGTGAAGTCTTCGGCTCCCAAACCCAAAACTCATGCTGCCATTTAAAGAACCAAGAAGCCTTCGTCAATCTTGGGATTGTCTTGAACAATGCCATGAGCGGCCAAGACCCTGAAAAGAATATTCCATTTGGCTTCTTTGCTAGAAATGGGATGTTTGTCGAGTGTCTTCTTTGTGTTAATAAGATTTTAGATAGAGACGGTGGTGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTACCCAAGAGCTCCAACAGGCTTTGAATGTTCAGAAGTTGTGTCAGAGAATTGCTTTGAAGAGATTGAAGGCTTTGGGATATGTTAAGAGGCAGATTCGAAATCCTCTTTCTGGGATTGTTTTTTCTAGGAAAATGATGGAGCGGACTGAGTTGGGAGTTGAACAAAAGCAGCTTTTGATTCATAGTGCTCATTGTCAAAGCCAGATCTCTAAGCTTATTGATGAGTCCTCCGATGATCTTGATAGGATCATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATCAGTCAAGTCATGATGAAGAGCAAAGGGAAAGGAATCCAAATAGTAAATGAGGTTGATGAAGAGATCATGTCTGAAACTCTATATGGAGACAATTTGAGACTTCAACAAATCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTATGCTTTCAACAAATGTGACTAAGGATCATTTGGGAAAGTCAGTACATCTTGTGCATGTGGAGTTCAGGATAACATATGTAGGTGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATGAAGATGCATCTGAAGAAGGTTTTAGCCTTCTCATAAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGGAAAGTCAACCTTCATTATAACTCTTGAGCTTGCTGCACCTCATTAG 3411 44.39 MSTSRPSQSTNTGGSSSSSSQSRHSARILTQTSIDAKLHSHFEQSGSSFDYSASIHLTTNPPTTTTTTAYLHHIQKSNLIQPFGCLLALHPTTLKLIAFSQNAPEFLTTVSHTVPTISDRPLLTFGTDLRSIFTAPTATALLKALAFPDVTLLNPVLVHSKSSGKPFYAILHRVTGSLIIDFEPVKPDEVPITAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMESIASLVMAIVVNEEDIEEEFDHNDHKNDVKKHKRKKLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLHDIASWILDCHVDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRIASHDMIFWFRSHTASEIRWGGAKHEAGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDNNMSSEMNRNSIQSTLSDLKIDGREELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKHLLTLVEDSSVQTVSKMLFLALQGEEEKNVEFEIKTQGNNSKKVESSAISLVVNACASKDLEENVVGVCLVAQDITHEKKVMDKFTKLEGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTNLTGCSREQVLNKMLLGEVFGSQTQNSCCHLKNQEAFVNLGIVLNNAMSGQDPEKNIPFGFFARNGMFVECLLCVNKILDRDGGVIGVFCFLQLATQELQQALNVQKLCQRIALKRLKALGYVKRQIRNPLSGIVFSRKMMERTELGVEQKQLLIHSAHCQSQISKLIDESSDDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIVNEVDEEIMSETLYGDNLRLQQIMADFLLISVNYAPTGGQLMLSTNVTKDHLGKSVHLVHVEFRITYVGGGIPESLLNEMFGNDEDASEEGFSLLISRKLVKLMNGDVRYVREAGKSTFIITLELAAPH 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52546997 52553027 - Tan0000082.1 Tan01g2783 740207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2783 1136 PIRSF Phytochrome_conventional 4 1136 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Tan01g2783 1136 SUPERFAMILY GAF domain-like 414 591 - -
Tan01g2783 1136 NCBIfam PAS domain S-box protein 632 751 IPR000014 -
Tan01g2783 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 631 740 IPR035965 -
Tan01g2783 1136 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Tan01g2783 1136 CDD PAS 636 745 IPR000014 -
Tan01g2783 1136 ProSiteProfiles Histidine kinase domain profile. 915 1134 IPR005467 -
Tan01g2783 1136 Gene3D PAS domain 774 894 - -
Tan01g2783 1136 Gene3D PAS domain 73 321 - -
Tan01g2783 1136 CDD HATPase_Phy-like 1021 1132 IPR044767 -
Tan01g2783 1136 SUPERFAMILY GAF domain-like 198 403 - -
Tan01g2783 1136 Gene3D - 974 1134 IPR036890 -
Tan01g2783 1136 Pfam Phytochrome region 419 593 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 967 1131 IPR036890 -
Tan01g2783 1136 Pfam PAS fold 761 886 IPR013767 GO:0006355(InterPro)
Tan01g2783 1136 Pfam PAS fold 628 745 IPR013767 GO:0006355(InterPro)
Tan01g2783 1136 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1022 1132 IPR003594 -
Tan01g2783 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 775 884 IPR035965 -
Tan01g2783 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 188 IPR035965 -
Tan01g2783 1136 MobiDBLite consensus disorder prediction 1 26 - -
Tan01g2783 1136 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 396 IPR016132 -
Tan01g2783 1136 Gene3D PAS domain 624 750 - -
Tan01g2783 1136 Gene3D - 199 567 IPR029016 -
Tan01g2783 1136 SMART HKATPase_4 1022 1134 IPR003594 -
Tan01g2783 1136 ProSiteProfiles PAS repeat profile. 625 695 IPR000014 -
Tan01g2783 1136 CDD HisKA 919 978 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 521 540 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 628 644 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 647 662 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 554 572 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 743 763 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 723 740 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 PRINTS Phytochrome signature 436 456 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2783 1136 ProSiteProfiles PAS repeat profile. 761 813 IPR000014 -
Tan01g2783 1136 FunFam Phytochrome 411 545 - -
Tan01g2783 1136 CDD PAS 772 886 IPR000014 -
Tan01g2783 1136 Gene3D - 411 584 IPR043150 -
Tan01g2783 1136 Pfam GAF domain 220 405 IPR003018 GO:0005515(InterPro)
Tan01g2783 1136 PANTHER OS08G0260000 PROTEIN 1 1010 - -
Tan01g2783 1136 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Tan01g2783 1136 Coils Coil 403 423 - -
Tan01g2783 1136 SMART pas_2 760 829 IPR000014 -
Tan01g2783 1136 SMART pas_2 627 693 IPR000014 -
Tan01g2783 1136 SMART gaf_1 218 416 IPR003018 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2783 Tan-Chr1:52546997 Tan02g0487 Tan-Chr2:4451723 0.00E+00 dispersed
Tan01g2783 Tan-Chr1:52546997 Tan01g2789 Tan-Chr1:53130787 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2783 K12120 - csv:101219585 1873.98