Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2788 ATGGAGATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCAAATAACGCTAATGCCAATGCGAATGTGACGCCGTACAATCTCTCTGAGATCTGGCAGTTCCCAATTAATGACGGAACTGGCGTTGAGGAATCTGGCGGTGGACTAGGCCTGAGGATGGCTCAGTTCGCCCATAATTTGGGGCAGTTTGGAGAGATTGCCATGGGGAATCGACAAGTTTCGCGTGGTGATCCAGTGGGCTTGCAATTGCAGCAGAGGCTAGCTCATGGCCTTGGCGGTCCCAAGAAGCGGCGTGATGCAGAGCAAGATTCGGCTAAGGTCAGTTCCACCTGCAATGGCAACAATGACAATGACAATAGCGGCGGGGCGAATGACTCAGGTGGGAAACGGGTTAAAACAGCAGCGTGTAGAGATGATAATCACGAATCTAAAACAGAAGCCGAACCCAGATCTGGCAAGGCCGAGCAGACCTCCCAGCCCCCACCAGAACAACCCAAACAGGATTATATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCCAGAAGAGAAAAGATAAGCGAGAGAATGAAAATTCTTCAGGATTTGGTCCCCGGGTGTAATAAGGTCATTGGAAAAGCACTCGTACTAGATGAGATAATAAATTACATTCAATCGCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGCCAACAAACATTCGATACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAGTACAGCCGTGGCTCATCCCCAGAATGGCTACATATGCAGATCGGTGGCGGTTTCGAAAGAACAACGTAG 903 48.39 MEMDPPTLMNQGSFPNNANANANVTPYNLSEIWQFPINDGTGVEESGGGLGLRMAQFAHNLGQFGEIAMGNRQVSRGDPVGLQLQQRLAHGLGGPKKRRDAEQDSAKVSSTCNGNNDNDNSGGANDSGGKRVKTAACRDDNHESKTEAEPRSGKAEQTSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52794623 52797486 - Tan0007179.1 Tan01g2788 740212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2788 300 Gene3D - 176 249 IPR036638 GO:0046983(InterPro)
Tan01g2788 300 MobiDBLite consensus disorder prediction 90 167 - -
Tan01g2788 300 MobiDBLite consensus disorder prediction 132 152 - -
Tan01g2788 300 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 98 255 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan01g2788 300 SMART finulus 185 235 IPR011598 GO:0046983(InterPro)
Tan01g2788 300 MobiDBLite consensus disorder prediction 106 127 - -
Tan01g2788 300 FunFam Basic helix-loop-helix transcription factor 176 248 - -
Tan01g2788 300 Pfam Helix-loop-helix DNA-binding domain 183 230 IPR011598 GO:0046983(InterPro)
Tan01g2788 300 Coils Coil 226 246 - -
Tan01g2788 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 229 IPR011598 GO:0046983(InterPro)
Tan01g2788 300 CDD bHLH_AtBPE_like 169 254 - -
Tan01g2788 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 246 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2788 Tan-Chr1:52794623 Tan09g2179 Tan-Chr9:71866654 5.60E-73 dispersed
Tan01g2788 Tan-Chr1:52794623 Tan02g0786 Tan-Chr2:7608675 8.80E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26471 PF00010 HLH 2.50E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2788 - - - 0.0