Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2789 ATGTCCTCGTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGACATAGCAACAGAATTATTGCTCAAACATCTGTTGATGCAAAGCTCCAAGCAGATTTTGAGGAATCTGGGAATTCCTTCGACTACTCAAGTTCAGTGCGTGTCACCAGTGATGTTAGCGGAGACCAACAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGAAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCACTATTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCACTATCCGGCCACTGACATCCCTCAAGCTGCACGCTTTTTGTTCATGAAGAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGACCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCTGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGCGAAAGAGATTATGGGGCTTGGTTGTATGCCATAATACGAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTAAACAAGGAATTAGAGCTGGAAAATCAAATTATAGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGAGATTGGGAATAACACCTAGTGACTTCCACTTGCAGGACATTGCCTCGTGGCTTTCTGAATATCATATGGATTCAACAGGGTTAAGTACTGACAGCTTGTATGATGCAGGATATCCAGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGATATGATATTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGACGATGGCAGAAAAATGCATCCAAGATCGTCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCGATCCACTCTTTACAACTTATCCTCAGAAATACTTTTAAAGATACAGATACAACTGAAATAAATAGAAAATCAATTCAAATGACTTTGGGTGACCTAAAAATTGAAGGTAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCAATTGGAAAGCATTTACTTACGTTAGTAGAAGATTCTTCTGTAGACGTTGTCAAAAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGATTTGCGTGAAAATGTTGTGGGTGTGTGTTTTGTAGCACAAGATATCACTGGTCAAAAGATGGTTATGGACAAGTTCACCCGATTAGAAGGCGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATCGATAAAATGCTTTTAGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTCTAAAAAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCCATGAGTGGTCAAGATCCTGAAAAGGTTTCCTTTGGTTTCTTTGCTCGGCATGGAATGTACGTGGAATGTCTCCTATGTGTCAATAAGATCTTGGATAAAGAGGGAGTGGTTACAGGAGTTTTCTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATGTCCAACGATTATGTGAGCAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATCAAAAGGCAGATACAAAATCCTCTTTCTGGGATCATCTTTTCAAGAAGATTATTGGAGCGCACTGAGTTGGGAATAGAACAAAAAAGGATTCTGCAGACTAGCATACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCAGACCTTGATAAAATTATTGATGGGTTCATTGATTTGGAAATGGTGGAGTTTACATTGCATGAAGTATTGACGGTATCAACTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTGCAGAAGAGGCCATGTCCGAGACCTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGATATCAGTTAGTTATGCGCCAGCAGGAGGCCAACTAACAATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTGGAGTTCAGGATAACATATGCTGGAGGAGGTATACCGGAATCGTTGCTAAACGAGATGTTTGGTAGCGAGGAGGATGCGTCCGAGGAGGGTTTTAGTCTACTCATCGGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCAGGTAAGTCGAGCTTCATCATAACTGTTGAGCTTGCTGCAGCACACAAGTCAAGAACGTAA 3372 41.46 MSSSRPSQSSSNSGRSRHSNRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGITPSDFHLQDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTTEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSVNGWNSKIAELTGLPVDKAIGKHLLTLVEDSSVDVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARHGMYVECLLCVNKILDKEGVVTGVFCFLQLASHELQQALNVQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKRILQTSIHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSTSQVMIKSKGKGIQIVNETAEEAMSETLYGDSLRLQQVLADFLLISVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLIGRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRT 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53130787 53138158 + Tan0013731.1 Tan01g2789 740213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2789 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Tan01g2789 1123 Pfam GAF domain 220 399 IPR003018 GO:0005515(InterPro)
Tan01g2789 1123 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Tan01g2789 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Tan01g2789 1123 CDD PAS 627 733 IPR000014 -
Tan01g2789 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Tan01g2789 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1112 IPR036890 -
Tan01g2789 1123 SMART pas_2 618 684 IPR000014 -
Tan01g2789 1123 SMART pas_2 748 817 IPR000014 -
Tan01g2789 1123 MobiDBLite consensus disorder prediction 1 24 - -
Tan01g2789 1123 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Tan01g2789 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Tan01g2789 1123 ProSiteProfiles Histidine kinase domain profile. 900 1119 IPR005467 -
Tan01g2789 1123 FunFam Phytochrome 612 743 - -
Tan01g2789 1123 SMART gaf_1 218 410 IPR003018 GO:0005515(InterPro)
Tan01g2789 1123 Gene3D PAS domain 763 877 - -
Tan01g2789 1123 Pfam PAS fold 619 733 IPR013767 GO:0006355(InterPro)
Tan01g2789 1123 Pfam PAS fold 749 871 IPR013767 GO:0006355(InterPro)
Tan01g2789 1123 Gene3D - 199 561 IPR029016 -
Tan01g2789 1123 Coils Coil 397 417 - -
Tan01g2789 1123 Gene3D - 961 1122 IPR036890 -
Tan01g2789 1123 Gene3D PAS domain 611 748 - -
Tan01g2789 1123 Gene3D PAS domain 74 321 - -
Tan01g2789 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Tan01g2789 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Tan01g2789 1123 SMART HKATPase_4 1005 1117 IPR003594 -
Tan01g2789 1123 FunFam Phytochrome 405 536 - -
Tan01g2789 1123 Pfam Phytochrome region 413 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Tan01g2789 1123 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Tan01g2789 1123 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Tan01g2789 1123 MobiDBLite consensus disorder prediction 39 64 - -
Tan01g2789 1123 Gene3D - 405 578 IPR043150 -
Tan01g2789 1123 SUPERFAMILY GAF domain-like 198 397 - -
Tan01g2789 1123 CDD PAS 760 871 IPR000014 -
Tan01g2789 1123 PANTHER OS08G0260000 PROTEIN 1 995 - -
Tan01g2789 1123 PIRSF Phytochrome_conventional 1 1123 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Tan01g2789 1123 SMART HisKA_10 893 954 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2789 1123 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Tan01g2789 1123 Pfam His Kinase A (phospho-acceptor) domain 894 954 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2789 1123 SUPERFAMILY GAF domain-like 408 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2789 K12120 - - csv:101208491 2128.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2789 Tan-Chr1:53130787 Tan02g0487 Tan-Chr2:4451723 0.00E+00 dispersed
Tan01g2783 Tan-Chr1:52546997 Tan01g2789 Tan-Chr1:53130787 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2314 . 28 1219 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1464.5
Tan01g2315 . 28 1152 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1345.1
Tan11g1724 . 23 986 Histidine Kinase Gene Family AT2G01830 73.0 0.0e+00 1339.3
Tan04g1702 . 20 1003 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1338.9
Tan06g1521 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan06g1522 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan02g0457 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan02g0458 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan05g0968 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0969 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0970 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan01g3520 . 1 998 Histidine Kinase Gene Family AT5G10720 58.3 6.8e-295 1010.7
Tan01g3521 . 1 961 Histidine Kinase Gene Family AT5G10720 57.5 1.0e-274 943.7
Tan01g2789 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.1 0.0e+00 1852.0
Tan01g2783 . 1 1134 Histidine Kinase Gene Family AT1G09570 72.0 0.0e+00 1645.9
Tan02g0487 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan02g0490 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan10g1077 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.3
Tan02g0489 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0488 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0491 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0492 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0493 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan10g1077 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Tan05g2567 . 31 1042 Histidine Kinase Gene Family AT2G18790 61.5 0.0e+00 1263.8
Tan01g2789 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1090.9
Tan02g0487 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan02g0490 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan01g2783 . 20 1071 Histidine Kinase Gene Family AT2G18790 51.5 1.9e-310 1062.8
Tan02g0489 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0488 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0487 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0490 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0489 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0488 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0491 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0492 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0493 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan10g1077 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.6 0.0e+00 1147.5
Tan01g2789 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Tan10g1077 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1708.0
Tan05g2567 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.1 0.0e+00 1303.9
Tan01g2789 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1138.3
Tan02g0487 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0490 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0489 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0488 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan05g2567 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1385.5
Tan10g1077 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1275.0
Tan02g0491 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0492 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0493 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56