Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2803 ATGGCCGATGTTAGAACCTTGTTCGTCTGTTCGCTGTTGGTGTTTGTGGTGGCAAATGCTGATGTGAATGAGGTTGATGAATATTGGCAGGCTCGTGCACGCGAAGCTCAAAAGGCCGCTCAAGATGCCTACAATCCCAACCCTGAAACTATTACCGATGACTTCAATGCCGCTGTCGGCCAGGAGATGGTTGGCAGCAACAAGACAAGAAGGAACCTGAAGAAATACGATGGTCCATGTTTGGCAACGAACCCCATAGATAGATGTTGGAGATGCGATCCAAATTGGGCCAACAACAGAAAGAAGCTAGCGGAATGCCCCTTGGGGTTTGGCCACCAAACCATCGGCGGAAAGAGAGGACCCATCTACGTGGTTTCTGACGCCTCTGACGATGACATGGTGAACCCCAAGCCCGGAACCATACGACACGCCGTTATCCAAAAAGGCCCACTTTGGATCACCTTCGATCGCAGCATGATCATCAATCTCACCCAAGAGCTCATGATTTCAAGCAATAAGACCATCGACGCTCGCGGCGTCAATGTCCATATTGCCTACGGCGCTGGCCTCACCATTCAGTTCGTCAACAATGTCATCATTCATGGCCTTCACATTCACGACATTGTCTCTAAATCTGGTGGAATGATTAGAGACGCAGTTGATCATTACGGCTTCCGAACCCAAAGCGACGGCGATGGCATCTCCATCTTTGGGTCTTCTCATGTTTGGATTGACCATGTTTCTATGTCCAATTGCCAAGATGGACTGATTGATGCCATCATGGGTTCCACTGCCATCACAATCTCCAACTCCCATTTCACTCATCACAATGAGGTGATGTTGTTCGGAGCGAGTGATAGTTACTCCGAGGACTCTGTTATGCAAGTGACGTTGGCATTCAACCACTTTGGGAGGGGATTGGTGCAAAGGATGCCAAGATGCAGATGGGGTTTCTTCCATGTTGTTAATAATGATTACACTCATTGGCTTATGTATGCCATTGGCGGCAGCCAACACCCCACCATTGTTAGCCAAGGAAATCGTTTCATTGCTCCTCCTAATCCAAATGCAAAAAATGTAACAAAGAGAGAATATGCAATGGAGAGCGAATGGAAGAACTGGTCATGGAGATCAGAGGGAGATTTGATGATGAATGGGGCAGTCTTTGTTCCATCAGGCGATCAAACAAAAGGCAAGAAGAATAACTTATCAAGATATGAGATGATTACGTTCAAGCCAGGAAGTTATGTGAGAAGACTTACACGCTTCTCTGGCACACTTGAATGCGTCGTAGGCAAACCATGCTAG 1308 47.4 MADVRTLFVCSLLVFVVANADVNEVDEYWQARAREAQKAAQDAYNPNPETITDDFNAAVGQEMVGSNKTRRNLKKYDGPCLATNPIDRCWRCDPNWANNRKKLAECPLGFGHQTIGGKRGPIYVVSDASDDDMVNPKPGTIRHAVIQKGPLWITFDRSMIINLTQELMISSNKTIDARGVNVHIAYGAGLTIQFVNNVIIHGLHIHDIVSKSGGMIRDAVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDSVMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKNVTKREYAMESEWKNWSWRSEGDLMMNGAVFVPSGDQTKGKKNNLSRYEMITFKPGSYVRRLTRFSGTLECVVGKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54903199 54904813 + Tan0019278.1 Tan01g2803 740227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Tan01g2803 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Tan01g2803 435 Gene3D - 83 428 IPR012334 -
Tan01g2803 435 SMART amb_all 158 355 IPR002022 -
Tan01g2803 435 SUPERFAMILY Pectin lyase-like 84 425 IPR011050 -
Tan01g2803 435 PANTHER PECTATE LYASE 18-RELATED 17 432 IPR045032 GO:0030570(InterPro)
Tan01g2803 435 Pfam Pectate lyase, N terminus 22 73 IPR007524 GO:0030570(InterPro)
Tan01g2803 435 Pfam Pectate lyase 167 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2803 Tan-Chr1:54903199 Tan07g1262 Tan-Chr7:56607071 6.10E-185 dispersed
Tan01g2803 Tan-Chr1:54903199 Tan01g2804 Tan-Chr1:54984656 2.40E-250 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2803 K01728 - csv:101217922 769.615