Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2803 | ATGGCCGATGTTAGAACCTTGTTCGTCTGTTCGCTGTTGGTGTTTGTGGTGGCAAATGCTGATGTGAATGAGGTTGATGAATATTGGCAGGCTCGTGCACGCGAAGCTCAAAAGGCCGCTCAAGATGCCTACAATCCCAACCCTGAAACTATTACCGATGACTTCAATGCCGCTGTCGGCCAGGAGATGGTTGGCAGCAACAAGACAAGAAGGAACCTGAAGAAATACGATGGTCCATGTTTGGCAACGAACCCCATAGATAGATGTTGGAGATGCGATCCAAATTGGGCCAACAACAGAAAGAAGCTAGCGGAATGCCCCTTGGGGTTTGGCCACCAAACCATCGGCGGAAAGAGAGGACCCATCTACGTGGTTTCTGACGCCTCTGACGATGACATGGTGAACCCCAAGCCCGGAACCATACGACACGCCGTTATCCAAAAAGGCCCACTTTGGATCACCTTCGATCGCAGCATGATCATCAATCTCACCCAAGAGCTCATGATTTCAAGCAATAAGACCATCGACGCTCGCGGCGTCAATGTCCATATTGCCTACGGCGCTGGCCTCACCATTCAGTTCGTCAACAATGTCATCATTCATGGCCTTCACATTCACGACATTGTCTCTAAATCTGGTGGAATGATTAGAGACGCAGTTGATCATTACGGCTTCCGAACCCAAAGCGACGGCGATGGCATCTCCATCTTTGGGTCTTCTCATGTTTGGATTGACCATGTTTCTATGTCCAATTGCCAAGATGGACTGATTGATGCCATCATGGGTTCCACTGCCATCACAATCTCCAACTCCCATTTCACTCATCACAATGAGGTGATGTTGTTCGGAGCGAGTGATAGTTACTCCGAGGACTCTGTTATGCAAGTGACGTTGGCATTCAACCACTTTGGGAGGGGATTGGTGCAAAGGATGCCAAGATGCAGATGGGGTTTCTTCCATGTTGTTAATAATGATTACACTCATTGGCTTATGTATGCCATTGGCGGCAGCCAACACCCCACCATTGTTAGCCAAGGAAATCGTTTCATTGCTCCTCCTAATCCAAATGCAAAAAATGTAACAAAGAGAGAATATGCAATGGAGAGCGAATGGAAGAACTGGTCATGGAGATCAGAGGGAGATTTGATGATGAATGGGGCAGTCTTTGTTCCATCAGGCGATCAAACAAAAGGCAAGAAGAATAACTTATCAAGATATGAGATGATTACGTTCAAGCCAGGAAGTTATGTGAGAAGACTTACACGCTTCTCTGGCACACTTGAATGCGTCGTAGGCAAACCATGCTAG | 1308 | 47.4 | MADVRTLFVCSLLVFVVANADVNEVDEYWQARAREAQKAAQDAYNPNPETITDDFNAAVGQEMVGSNKTRRNLKKYDGPCLATNPIDRCWRCDPNWANNRKKLAECPLGFGHQTIGGKRGPIYVVSDASDDDMVNPKPGTIRHAVIQKGPLWITFDRSMIINLTQELMISSNKTIDARGVNVHIAYGAGLTIQFVNNVIIHGLHIHDIVSKSGGMIRDAVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDSVMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKNVTKREYAMESEWKNWSWRSEGDLMMNGAVFVPSGDQTKGKKNNLSRYEMITFKPGSYVRRLTRFSGTLECVVGKPC | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54903199 | 54904813 | + | Tan0019278.1 | Tan01g2803 | 740227 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 332 | 351 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 166 | 182 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 130 | 155 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 406 | 429 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 106 | 123 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 374 | 398 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 230 | 251 | IPR018082 | - | |
Tan01g2803 | 435 | PRINTS | Pollen allergen Amb family signature | 310 | 329 | IPR018082 | - | |
Tan01g2803 | 435 | Gene3D | - | 83 | 428 | IPR012334 | - | |
Tan01g2803 | 435 | SMART | amb_all | 158 | 355 | IPR002022 | - | |
Tan01g2803 | 435 | SUPERFAMILY | Pectin lyase-like | 84 | 425 | IPR011050 | - | |
Tan01g2803 | 435 | PANTHER | PECTATE LYASE 18-RELATED | 17 | 432 | IPR045032 | GO:0030570(InterPro) | |
Tan01g2803 | 435 | Pfam | Pectate lyase, N terminus | 22 | 73 | IPR007524 | GO:0030570(InterPro) | |
Tan01g2803 | 435 | Pfam | Pectate lyase | 167 | 349 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2803 | Tan-Chr1:54903199 | Tan07g1262 | Tan-Chr7:56607071 | 6.10E-185 | dispersed | |
Tan01g2803 | Tan-Chr1:54903199 | Tan01g2804 | Tan-Chr1:54984656 | 2.40E-250 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2803 | K01728 | - | csv:101217922 | 769.615 |