Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2804 ATGGCCGCTTTTAGAACCTTGTTGGTCGTCTGTTCGCTGTTGGTGTTTGCGGTGGCAAATACTGATGTGAATGAGGTTGATGAATACTGGAAGACTCGTGCCCGCGAAGCTCAAAAGGCCGCTCAAGATGCCTACATTCCCAACCCTGAAACTATTACCGATGACTTCAATGCCGCTGTGGGCCGGGAGATGACGGGCAGCAACAGTACGAGAAGGAGCCTGAAGAAATACAAGGGTCCATGCTTGGCGACGAACCCCATAGACAGATGCTGGAGATGCGATCCAAATTGGGCTAACAACAGAAAGAAGCTGGCGGAATGTCCCTTGGGGTTTGGCCACCAAACCATCGGCGGAAAGAGAGGACCCATCTACGTTGTGACAGACGGCTCCGACGATGACATTGTGAACCCAAAGCCCGGAACCCTACGCCACGCCGTTATTCAAAAAGGCCCACTTTGGATCATCTTCGGTCGTAGCATGATCATCAGGCTCACCCAAGAACTCATGATTTCAAGCAATAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTTCGGCGCTGGACTCACCATTCAGTTCGTTAACAATGTCATCATTCATGGCCTTCACATTCACGACATTGTCTCCAAATCTGGTGGAATGATTAGAGATTCAGTTGATCATTACGGCTTCCGAACCCAAAGCGACGGGGATGGCATCTCCATCTTTGGGTCTTCTCATGTTTGGATTGACCATGTTTCTATGTCCAATTGCCAAGATGGACTGATTGATGCCATCATGGGTTCCACTGCCATCACAATCTCCAACTCCCATTTCACTCATCACAATGAGGTGATGTTGTTCGGAGCGAGTGATAGTTACTCCGAGGACTCTGTTATGCAAGTAACGTTGGCATTCAACCACTTTGGAAGGGGATTGGTGCAAAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTCGTTAATAATGATTACACTCATTGGCTTATGTATGCCATTGGCGGCAGCCAGCATCCCACCATTGTTAGCCAAGGAAATCGTTTCATTGCTCCTCCTAATCCTAATGCAAAAAATGTAACAAAGAGAGAATATGCAATGGAGAGCGAATGGAAGAACTGGTCATGGAGATCAGAGGGAGATTTGATGATGAATGGGGCAGTCTTTGTTGCATCAGGCGATCAAACAAAAGGGAAGAAGAAGAACTTATCAAGATATGAGATGATTACGTTCAAGCCAGGAAGTTACGTGAGAAGACTTACACGCTTCTCTGGCACACTTGAATGCGTCGTAGGCAAACCATGCTAG 1311 47.98 MAAFRTLLVVCSLLVFAVANTDVNEVDEYWKTRAREAQKAAQDAYIPNPETITDDFNAAVGREMTGSNSTRRSLKKYKGPCLATNPIDRCWRCDPNWANNRKKLAECPLGFGHQTIGGKRGPIYVVTDGSDDDIVNPKPGTLRHAVIQKGPLWIIFGRSMIIRLTQELMISSNKTIDARGANVHIAFGAGLTIQFVNNVIIHGLHIHDIVSKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDSVMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKNVTKREYAMESEWKNWSWRSEGDLMMNGAVFVASGDQTKGKKKNLSRYEMITFKPGSYVRRLTRFSGTLECVVGKPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54984656 54986243 - Tan0014447.1 Tan01g2804 740228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2804 436 SUPERFAMILY Pectin lyase-like 58 406 IPR011050 -
Tan01g2804 436 PANTHER PECTATE LYASE 18-RELATED 17 433 IPR045032 GO:0030570(InterPro)
Tan01g2804 436 Pfam Pectate lyase, N terminus 23 74 IPR007524 GO:0030570(InterPro)
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Tan01g2804 436 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Tan01g2804 436 Pfam Pectate lyase 168 350 IPR002022 -
Tan01g2804 436 SMART amb_all 159 356 IPR002022 -
Tan01g2804 436 Gene3D - 84 429 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2804 Tan-Chr1:54984656 Tan07g1259 Tan-Chr7:56526653 1.70E-187 dispersed
Tan01g2803 Tan-Chr1:54903199 Tan01g2804 Tan-Chr1:54984656 2.40E-250 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2804 K01728 - csv:101217922 784.252