Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2804 | ATGGCCGCTTTTAGAACCTTGTTGGTCGTCTGTTCGCTGTTGGTGTTTGCGGTGGCAAATACTGATGTGAATGAGGTTGATGAATACTGGAAGACTCGTGCCCGCGAAGCTCAAAAGGCCGCTCAAGATGCCTACATTCCCAACCCTGAAACTATTACCGATGACTTCAATGCCGCTGTGGGCCGGGAGATGACGGGCAGCAACAGTACGAGAAGGAGCCTGAAGAAATACAAGGGTCCATGCTTGGCGACGAACCCCATAGACAGATGCTGGAGATGCGATCCAAATTGGGCTAACAACAGAAAGAAGCTGGCGGAATGTCCCTTGGGGTTTGGCCACCAAACCATCGGCGGAAAGAGAGGACCCATCTACGTTGTGACAGACGGCTCCGACGATGACATTGTGAACCCAAAGCCCGGAACCCTACGCCACGCCGTTATTCAAAAAGGCCCACTTTGGATCATCTTCGGTCGTAGCATGATCATCAGGCTCACCCAAGAACTCATGATTTCAAGCAATAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTTCGGCGCTGGACTCACCATTCAGTTCGTTAACAATGTCATCATTCATGGCCTTCACATTCACGACATTGTCTCCAAATCTGGTGGAATGATTAGAGATTCAGTTGATCATTACGGCTTCCGAACCCAAAGCGACGGGGATGGCATCTCCATCTTTGGGTCTTCTCATGTTTGGATTGACCATGTTTCTATGTCCAATTGCCAAGATGGACTGATTGATGCCATCATGGGTTCCACTGCCATCACAATCTCCAACTCCCATTTCACTCATCACAATGAGGTGATGTTGTTCGGAGCGAGTGATAGTTACTCCGAGGACTCTGTTATGCAAGTAACGTTGGCATTCAACCACTTTGGAAGGGGATTGGTGCAAAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTCGTTAATAATGATTACACTCATTGGCTTATGTATGCCATTGGCGGCAGCCAGCATCCCACCATTGTTAGCCAAGGAAATCGTTTCATTGCTCCTCCTAATCCTAATGCAAAAAATGTAACAAAGAGAGAATATGCAATGGAGAGCGAATGGAAGAACTGGTCATGGAGATCAGAGGGAGATTTGATGATGAATGGGGCAGTCTTTGTTGCATCAGGCGATCAAACAAAAGGGAAGAAGAAGAACTTATCAAGATATGAGATGATTACGTTCAAGCCAGGAAGTTACGTGAGAAGACTTACACGCTTCTCTGGCACACTTGAATGCGTCGTAGGCAAACCATGCTAG | 1311 | 47.98 | MAAFRTLLVVCSLLVFAVANTDVNEVDEYWKTRAREAQKAAQDAYIPNPETITDDFNAAVGREMTGSNSTRRSLKKYKGPCLATNPIDRCWRCDPNWANNRKKLAECPLGFGHQTIGGKRGPIYVVTDGSDDDIVNPKPGTLRHAVIQKGPLWIIFGRSMIIRLTQELMISSNKTIDARGANVHIAFGAGLTIQFVNNVIIHGLHIHDIVSKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDSVMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKNVTKREYAMESEWKNWSWRSEGDLMMNGAVFVASGDQTKGKKKNLSRYEMITFKPGSYVRRLTRFSGTLECVVGKPC | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54984656 | 54986243 | - | Tan0014447.1 | Tan01g2804 | 740228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2804 | 436 | SUPERFAMILY | Pectin lyase-like | 58 | 406 | IPR011050 | - | |
Tan01g2804 | 436 | PANTHER | PECTATE LYASE 18-RELATED | 17 | 433 | IPR045032 | GO:0030570(InterPro) | |
Tan01g2804 | 436 | Pfam | Pectate lyase, N terminus | 23 | 74 | IPR007524 | GO:0030570(InterPro) | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 407 | 430 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 231 | 252 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 375 | 399 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 333 | 352 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 107 | 124 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 131 | 156 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 311 | 330 | IPR018082 | - | |
Tan01g2804 | 436 | PRINTS | Pollen allergen Amb family signature | 167 | 183 | IPR018082 | - | |
Tan01g2804 | 436 | Pfam | Pectate lyase | 168 | 350 | IPR002022 | - | |
Tan01g2804 | 436 | SMART | amb_all | 159 | 356 | IPR002022 | - | |
Tan01g2804 | 436 | Gene3D | - | 84 | 429 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2804 | Tan-Chr1:54984656 | Tan07g1259 | Tan-Chr7:56526653 | 1.70E-187 | dispersed | |
Tan01g2803 | Tan-Chr1:54903199 | Tan01g2804 | Tan-Chr1:54984656 | 2.40E-250 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2804 | K01728 | - | csv:101217922 | 784.252 |