Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2819 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGCCATTAAACCCCGAGCTCTCGCCGGAACCCTGTTCAAACCGCAGACTATGTAGCCTCAACTCCTCTCGCCCACTCCTCACTCTCACCACTACAACACGAAAACCTTCTCCGAAATGCCAATACTCTTGGAACACGCAGCAGCAGCAGCCGCCCTTCGAACCAGGCTCTCAGGCCGATTCATTTCCGCCACAAACTCGCGCCGGAGCTGCAGCATTGCCGCCAAGGTTCTTTGTCGGTCATTCGATTTACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTCGGGCACCGGAGTTTACACCTCTGGATTCAGGGGCGTTCAAAATATCAAGGGAAGGATTTGTATTACTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCGCGGGAGTCTTGTGAATTTTTTCACGATCCCTACAAGGGAAAAAGTGATGAGGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGTGTTCAGAACAAACTAATCAACCTGGATGAGAGTATTTATATTCCCATCACCAAAGCTGAATATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCATGAGGCCAGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAGCAGATAG 819 48.47 MLRLQWLSSSLLPPLNPELSPEPCSNRRLCSLNSSRPLLTLTTTTRKPSPKCQYSWNTQQQQPPFEPGSQADSFPPQTRAGAAALPPRFFVGHSIYKGKAALTVEPRAPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINLDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTIMRPEDSSRVNNANPRYGGDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56868200 56871856 + Tan0021251.1 Tan01g2819 740243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2819 272 Gene3D Transcriptional Coactivator Pc4; Chain A 80 253 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2819 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 272 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan01g2819 272 MobiDBLite consensus disorder prediction 40 78 - -
Tan01g2819 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan01g2819 272 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 80 256 - -
Tan01g2819 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2819 272 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2819 Tan-Chr1:56868200 Tan10g1838 Tan-Chr10:58033529 2.60E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26475 PF08536 Whirly 2.40E-60 CL0609 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2819 K26559 - csv:101203474 447.973