Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2819 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGCCATTAAACCCCGAGCTCTCGCCGGAACCCTGTTCAAACCGCAGACTATGTAGCCTCAACTCCTCTCGCCCACTCCTCACTCTCACCACTACAACACGAAAACCTTCTCCGAAATGCCAATACTCTTGGAACACGCAGCAGCAGCAGCCGCCCTTCGAACCAGGCTCTCAGGCCGATTCATTTCCGCCACAAACTCGCGCCGGAGCTGCAGCATTGCCGCCAAGGTTCTTTGTCGGTCATTCGATTTACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTCGGGCACCGGAGTTTACACCTCTGGATTCAGGGGCGTTCAAAATATCAAGGGAAGGATTTGTATTACTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCGCGGGAGTCTTGTGAATTTTTTCACGATCCCTACAAGGGAAAAAGTGATGAGGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGTGTTCAGAACAAACTAATCAACCTGGATGAGAGTATTTATATTCCCATCACCAAAGCTGAATATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCATGAGGCCAGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAGCAGATAG 819 48.47 MLRLQWLSSSLLPPLNPELSPEPCSNRRLCSLNSSRPLLTLTTTTRKPSPKCQYSWNTQQQQPPFEPGSQADSFPPQTRAGAAALPPRFFVGHSIYKGKAALTVEPRAPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINLDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTIMRPEDSSRVNNANPRYGGDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56868200 56871856 + Tan0021251.1 Tan01g2819 740243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2819 272 Gene3D Transcriptional Coactivator Pc4; Chain A 80 253 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2819 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 272 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan01g2819 272 MobiDBLite consensus disorder prediction 40 78 - -
Tan01g2819 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan01g2819 272 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 80 256 - -
Tan01g2819 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2819 272 MobiDBLite consensus disorder prediction 40 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2819 K26559 - - csv:101203474 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2819 Tan-Chr1:56868200 Tan10g1838 Tan-Chr10:58033529 2.60E-40 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2819 . 47 272 Whirly Transcription Factor Family AT1G14410 70.0 5.3e-91 331.6
Tan10g1838 . 56 215 Whirly Transcription Factor Family AT1G71260 66.3 1.4e-58 223.8
Tan01g2819 . 47 272 Whirly Transcription Factor Family AT2G02740 70.0 7.8e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26475 PF08536 Whirly 2.40E-60 CL0609 Tan TF