Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2821 | ATGGACTTTACAGTTCTAAATTCAGAGTTGTGTTCTATCAAAAGTGATTCCATGGGCGTCAAGTGCATAAAGAGACGGCGGAGAAGTGCTTCTTCTTCCTCAACAGTTGGAGGTGTGGGCTGCAATAATGGAGATCATCAACCACGCAAATCAGTGGCGGCAGATCAATCCACTCCCACAAAAAGAAGCTCCAAATTTCGTGGAGTCAGCAGACATCGATGGACAGGACGATACGAAGCTCACTTATGGGACAAAGCGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCAGCTAGAGCATATGACTTGGCTGCCCTCAAGTACTGGGGAACATCAACTTTCACCAATTTCCCGGTATCTGACTATGAGAAAGAAATTAAGATAATGAAAATTGTGACAAAGGAAGAATATTTGGCTTCTTTAAGAAGGAGAAGCAGTGGTTTTTCAAGGGGTGTATCCAAATATCGAGGAGTTGCAAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGGAGAGTCTTTGGGAACAAGTATTTGTACCTTGGAACTTACGGTACACAAGAGGAGGCAGCGAGGGCATACGACATAGCAGCAATCGAATACAGAGGGATAAACGCAGTGACAAACTTCGACCTGAGCAGTTACATTACATGGCTCAAACCTCAACAACAACAAAAACAACAACAACATTGTCCTCCGCCGCCATTATTGTCACTTTCTTCTAATGATCACTTTCTTCCTATCATCCCTAATAATAATAATAATAATATTATTAGTATTAATATTCCAACTGCCACTAGTACCTCTCGCTCAGCCCTGGGCCTCCTCCTAAAATCCTCCCTCTTCAAACACCTAATTCTCCAGAACAACCTTCTCATCAATAACAACCTCAATGAAGATGAAGAACAAGAACATCAACATCATGAACCTACCGCCATCTTTTCTGTTCCTAATCATAATAATTACTCCCACTTTCACTACTAA | 1017 | 41.99 | MDFTVLNSELCSIKSDSMGVKCIKRRRRSASSSSTVGGVGCNNGDHQPRKSVAADQSTPTKRSSKFRGVSRHRWTGRYEAHLWDKASWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSDYEKEIKIMKIVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSSYITWLKPQQQQKQQQHCPPPPLLSLSSNDHFLPIIPNNNNNNIISINIPTATSTSRSALGLLLKSSLFKHLILQNNLLINNNLNEDEEQEHQHHEPTAIFSVPNHNNYSHFHY | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57040634 | 57047802 | + | Tan0017951.1 | Tan01g2821 | 740245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2821 | 338 | MobiDBLite | consensus disorder prediction | 49 | 64 | - | - | |
Tan01g2821 | 338 | Gene3D | AP2/ERF domain | 163 | 224 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | Gene3D | AP2/ERF domain | 64 | 130 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | MobiDBLite | consensus disorder prediction | 311 | 331 | - | - | |
Tan01g2821 | 338 | ProSiteProfiles | AP2/ERF domain profile. | 164 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | SMART | rav1_2 | 65 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | SMART | rav1_2 | 164 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | FunFam | AP2-like ethylene-responsive transcription factor | 163 | 224 | - | - | |
Tan01g2821 | 338 | PRINTS | Ethylene responsive element binding protein signature | 204 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | CDD | AP2 | 163 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | CDD | AP2 | 64 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 51 | 238 | - | - | |
Tan01g2821 | 338 | SUPERFAMILY | DNA-binding domain | 64 | 130 | IPR016177 | GO:0003677(InterPro) | |
Tan01g2821 | 338 | Pfam | AP2 domain | 163 | 214 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2821 | 338 | MobiDBLite | consensus disorder prediction | 32 | 68 | - | - | |
Tan01g2821 | 338 | SUPERFAMILY | DNA-binding domain | 163 | 224 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2821 | Tan-Chr1:57040634 | Tan07g1256 | Tan-Chr7:56439284 | 3.30E-90 | dispersed | |
Tan01g2821 | Tan-Chr1:57040634 | Tan08g1184 | Tan-Chr8:28966042 | 2.10E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26476 | PF00847 | AP2 | 3.40E-09 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2821 | - | - | - | 0.0 |