Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2821 ATGGACTTTACAGTTCTAAATTCAGAGTTGTGTTCTATCAAAAGTGATTCCATGGGCGTCAAGTGCATAAAGAGACGGCGGAGAAGTGCTTCTTCTTCCTCAACAGTTGGAGGTGTGGGCTGCAATAATGGAGATCATCAACCACGCAAATCAGTGGCGGCAGATCAATCCACTCCCACAAAAAGAAGCTCCAAATTTCGTGGAGTCAGCAGACATCGATGGACAGGACGATACGAAGCTCACTTATGGGACAAAGCGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCAGCTAGAGCATATGACTTGGCTGCCCTCAAGTACTGGGGAACATCAACTTTCACCAATTTCCCGGTATCTGACTATGAGAAAGAAATTAAGATAATGAAAATTGTGACAAAGGAAGAATATTTGGCTTCTTTAAGAAGGAGAAGCAGTGGTTTTTCAAGGGGTGTATCCAAATATCGAGGAGTTGCAAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGGAGAGTCTTTGGGAACAAGTATTTGTACCTTGGAACTTACGGTACACAAGAGGAGGCAGCGAGGGCATACGACATAGCAGCAATCGAATACAGAGGGATAAACGCAGTGACAAACTTCGACCTGAGCAGTTACATTACATGGCTCAAACCTCAACAACAACAAAAACAACAACAACATTGTCCTCCGCCGCCATTATTGTCACTTTCTTCTAATGATCACTTTCTTCCTATCATCCCTAATAATAATAATAATAATATTATTAGTATTAATATTCCAACTGCCACTAGTACCTCTCGCTCAGCCCTGGGCCTCCTCCTAAAATCCTCCCTCTTCAAACACCTAATTCTCCAGAACAACCTTCTCATCAATAACAACCTCAATGAAGATGAAGAACAAGAACATCAACATCATGAACCTACCGCCATCTTTTCTGTTCCTAATCATAATAATTACTCCCACTTTCACTACTAA 1017 41.99 MDFTVLNSELCSIKSDSMGVKCIKRRRRSASSSSTVGGVGCNNGDHQPRKSVAADQSTPTKRSSKFRGVSRHRWTGRYEAHLWDKASWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSDYEKEIKIMKIVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSSYITWLKPQQQQKQQQHCPPPPLLSLSSNDHFLPIIPNNNNNNIISINIPTATSTSRSALGLLLKSSLFKHLILQNNLLINNNLNEDEEQEHQHHEPTAIFSVPNHNNYSHFHY 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57040634 57047802 + Tan0017951.1 Tan01g2821 740245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2821 338 MobiDBLite consensus disorder prediction 49 64 - -
Tan01g2821 338 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 MobiDBLite consensus disorder prediction 311 331 - -
Tan01g2821 338 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 SMART rav1_2 65 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 SMART rav1_2 164 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Tan01g2821 338 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 CDD AP2 163 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 CDD AP2 64 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 238 - -
Tan01g2821 338 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677(InterPro)
Tan01g2821 338 Pfam AP2 domain 163 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2821 338 MobiDBLite consensus disorder prediction 32 68 - -
Tan01g2821 338 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2821 Tan-Chr1:57040634 Tan07g1256 Tan-Chr7:56439284 3.30E-90 dispersed
Tan01g2821 Tan-Chr1:57040634 Tan08g1184 Tan-Chr8:28966042 2.10E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26476 PF00847 AP2 3.40E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2821 - - - 0.0