Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2830 ATGTCGATCTATTCTTCCTCCGACGGCTTCATTGACTCTCACCTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCTGGAGAGTCGCTGGAGTACTTGTCGGATTTTGACTTGCCGGCCAGTAGTGAGGATTCTATCGCCAGTTTCATAGAGGACGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTCCAGTCTCAATTGTTGGATTCTTCCGCTAGAGCTGACTCTGTTGCATGGATTCTAAAGGTTCAAGCATATTACGGTTTTCAACCACTCACCGCATACCTCTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCTGCTTGCCGGAAACAAATGGGTGGCCAATGCAGCTTCTTTCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCCCTTGTTCCTTCTTTCCTGGATCTCCAGATTGAAGGGGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTCAGCTTTATCGGATTCTTCGCTTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACAGAAATTATTCTGTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATTCCGAATTTGACCCTCTTGAATCCTGAACACGCCGAGTCTTGGTGCAATGGACTCAGCAAAGAGAAAATTGTCGGGTGTTATCGGTTAATGCAGCCGTTAACAGCAGAGAGTCATCGGAGGAAGACCCCGACAGTGATACCGCAGCTCCGAGTCAGAATCCGAGCTGGGTTGAGGTACAGTGATTCTTCATCATCCTCCTCATCATCAAGGTTACCTTTTAAAAGGAGAAAATTGAATAATTGCGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGCTAAGAGCAGACGAATAA 1008 46.23 MSIYSSSDGFIDSHLLCDEDSSGILSGESLEYLSDFDLPASSEDSIASFIEDERHFVPGIDYLSRFQSQLLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRCLPETNGWPMQLLSVACLSLAAKMEEPLVPSFLDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKEKIVGCYRLMQPLTAESHRRKTPTVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCVWVEDDKENSKLRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57946820 57950667 + Tan0005842.1 Tan01g2830 740254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2830 335 SUPERFAMILY Cyclin-like 40 175 IPR036915 -
Tan01g2830 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Tan01g2830 335 SMART Cyclin_C_2 178 311 IPR004367 -
Tan01g2830 335 Gene3D - 59 176 - -
Tan01g2830 335 Pfam Cyclin, C-terminal domain 178 281 IPR004367 -
Tan01g2830 335 Gene3D - 48 239 - -
Tan01g2830 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Tan01g2830 335 FunFam D2/4-type cyclin 59 176 - -
Tan01g2830 335 PANTHER CYCLINS 42 275 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan01g2830 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Tan01g2830 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Tan01g2830 335 SMART cyclin_7 81 169 IPR013763 -
Tan01g2830 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2830 Tan-Chr1:57946820 Tan04g1185 Tan-Chr4:11087699 2.60E-127 dispersed
Tan01g2830 Tan-Chr1:57946820 Tan02g2449 Tan-Chr2:93112921 1.10E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2830 K18810 - csv:101210686 610.527