Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2830 | ATGTCGATCTATTCTTCCTCCGACGGCTTCATTGACTCTCACCTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCTGGAGAGTCGCTGGAGTACTTGTCGGATTTTGACTTGCCGGCCAGTAGTGAGGATTCTATCGCCAGTTTCATAGAGGACGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTCCAGTCTCAATTGTTGGATTCTTCCGCTAGAGCTGACTCTGTTGCATGGATTCTAAAGGTTCAAGCATATTACGGTTTTCAACCACTCACCGCATACCTCTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCTGCTTGCCGGAAACAAATGGGTGGCCAATGCAGCTTCTTTCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCCCTTGTTCCTTCTTTCCTGGATCTCCAGATTGAAGGGGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTCAGCTTTATCGGATTCTTCGCTTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACAGAAATTATTCTGTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATTCCGAATTTGACCCTCTTGAATCCTGAACACGCCGAGTCTTGGTGCAATGGACTCAGCAAAGAGAAAATTGTCGGGTGTTATCGGTTAATGCAGCCGTTAACAGCAGAGAGTCATCGGAGGAAGACCCCGACAGTGATACCGCAGCTCCGAGTCAGAATCCGAGCTGGGTTGAGGTACAGTGATTCTTCATCATCCTCCTCATCATCAAGGTTACCTTTTAAAAGGAGAAAATTGAATAATTGCGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGCTAAGAGCAGACGAATAA | 1008 | 46.23 | MSIYSSSDGFIDSHLLCDEDSSGILSGESLEYLSDFDLPASSEDSIASFIEDERHFVPGIDYLSRFQSQLLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRCLPETNGWPMQLLSVACLSLAAKMEEPLVPSFLDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKEKIVGCYRLMQPLTAESHRRKTPTVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCVWVEDDKENSKLRADE | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57946820 | 57950667 | + | Tan0005842.1 | Tan01g2830 | 740254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2830 | 335 | SUPERFAMILY | Cyclin-like | 40 | 175 | IPR036915 | - | |
Tan01g2830 | 335 | CDD | CYCLIN_AtCycD-like_rpt2 | 178 | 268 | - | - | |
Tan01g2830 | 335 | SMART | Cyclin_C_2 | 178 | 311 | IPR004367 | - | |
Tan01g2830 | 335 | Gene3D | - | 59 | 176 | - | - | |
Tan01g2830 | 335 | Pfam | Cyclin, C-terminal domain | 178 | 281 | IPR004367 | - | |
Tan01g2830 | 335 | Gene3D | - | 48 | 239 | - | - | |
Tan01g2830 | 335 | CDD | CYCLIN_AtCycD-like_rpt1 | 75 | 173 | - | - | |
Tan01g2830 | 335 | FunFam | D2/4-type cyclin | 59 | 176 | - | - | |
Tan01g2830 | 335 | PANTHER | CYCLINS | 42 | 275 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Tan01g2830 | 335 | ProSitePatterns | Cyclins signature. | 76 | 107 | IPR048258 | - | |
Tan01g2830 | 335 | SUPERFAMILY | Cyclin-like | 160 | 277 | IPR036915 | - | |
Tan01g2830 | 335 | SMART | cyclin_7 | 81 | 169 | IPR013763 | - | |
Tan01g2830 | 335 | Pfam | Cyclin, N-terminal domain | 45 | 176 | IPR006671 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2830 | Tan-Chr1:57946820 | Tan04g1185 | Tan-Chr4:11087699 | 2.60E-127 | dispersed | |
Tan01g2830 | Tan-Chr1:57946820 | Tan02g2449 | Tan-Chr2:93112921 | 1.10E-48 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2830 | K18810 | - | csv:101210686 | 610.527 |