Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g2834 | ATGTCCTCATCACTCTGTTCGTCACTTCGGGCATTGACGCCGCAGTTCTGGCGGCAGAAGAACTTGAGATTCTTCATATTGCTTCAATCCAAGAGATGTATATGCTTCGCGCCTTGCTTCGTTGCTTGTTTGAGCAGCAATGACGACTCTGTTGCAATCCCCAAACCGGCGCCGCTGGCCTTCGATCCGGCGGAGGAGCTGTACGGACTTGGCGTCGATTTAAAGCCAAGGTATTCAGCTTCTAGCGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGCTACCATGTCCAAGTTGCCGAGGCAGGGGTTATGCGCCGTGTACGGAGTGTGGAATTGAAAGATCCCGTGCAGACTGTTCCGTGTGTAATGGAAAGGGTATAGTGACCTGCCACCAATGCTTGGGAGATCGTGTCATATGGGAGGAGTCCATTGATGAACGACCGTGGGAGAAAGCACGCTCCACTTCTCCATTGAGAATGAAGGAAGACGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAGAAGAAGAAAACGAAGCGTGTTTACCAATCACCTCCTCCCGAAGTGGGATTAAAGATCAGTCGATCATTAAAAAGTCTCAATGCCAAAACAGGTCTATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCCACTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCCAAAGGAAGTGTTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAGTGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGTAAAAACTGCGGACGTGAGGGGCACCGAAGACACTATTGTCCAGAGCTTAAGGAAGATTCCAATGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCACAACCGAAGGACCTGTAAGAAGTCTAGGTTGAACAGTAAACCAGTGAGCACAACAATTCAGCGTCATTGCAGGATATGTGGTGTAAAGGGCCACAACAGGAGAAGCTGTTCGAAGTCCGAGATGAGCGATCCAAATAGCACAGGAATGCATTATCCCCATCATCAGACTCGTCGCAATGTGTCGAACCAGAATTTGATCAATGGAGATAGGATGGCTAATGAAAACAGCAGAGTGAGGCAGTATCACTGTAGGATCTGCAATGAAAACGGTCACAATTGGCGTAACTGTCCCAATATCGACAACAAAGTTAACCATACAACTTCTAGAAGAACATACGCCTGCAAACTATGCCATGAAAAAGGGCATAATAGTAGGACATGCCCAAATAGAAATATGAACAATCTACAGAAAAATCCTCCAGGCGCTGTAAACCAATGA | 1371 | 46.02 | MSSSLCSSLRALTPQFWRQKNLRFFILLQSKRCICFAPCFVACLSSNDDSVAIPKPAPLAFDPAEELYGLGVDLKPRYSASSAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKTKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKKAKGSVEARKRTSEALKAFFSDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEDSNDRRFRCRVCGEKGHNRRTCKKSRLNSKPVSTTIQRHCRICGVKGHNRRSCSKSEMSDPNSTGMHYPHHQTRRNVSNQNLINGDRMANENSRVRQYHCRICNENGHNWRNCPNIDNKVNHTTSRRTYACKLCHEKGHNSRTCPNRNMNNLQKNPPGAVNQ | 456 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 59008775 | 59034643 | - | Tan0019449.1 | Tan01g2834 | 740258 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g2834 | 456 | ProSiteProfiles | Zinc finger CCHC-type profile. | 276 | 291 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | SUPERFAMILY | Retrovirus zinc finger-like domains | 384 | 442 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | Coils | Coil | 165 | 185 | - | - | |
| Tan01g2834 | 456 | Gene3D | - | 387 | 443 | - | - | |
| Tan01g2834 | 456 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 392 | 442 | IPR051714 | GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER) | |
| Tan01g2834 | 456 | SUPERFAMILY | Retrovirus zinc finger-like domains | 273 | 320 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | ProSiteProfiles | Zinc finger CCHC-type profile. | 302 | 318 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | SMART | c2hcfinal6 | 302 | 318 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | SMART | c2hcfinal6 | 275 | 291 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | SMART | c2hcfinal6 | 424 | 440 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | SMART | c2hcfinal6 | 393 | 409 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | SMART | c2hcfinal6 | 333 | 349 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2834 | 456 | Gene3D | - | 273 | 327 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g2834 | - | - | - | 0.0 |