Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2895 ATGGCGGGGAAGCCCAACTCAGTTTCCTTCAGGGTTCCATACAGGAACCTCCAGGATGCAGAAGTGGAGATGGTGGCTGTTGATGAACAGCAGCTCCAAGGGATCGATCTCAATTCTCCTTCTTCTGATACATGTCCCAATGGCAACGCAGACAATTCGTCGTCAACGCCTCATGTTAGATCTACGCCCAATAGTTTGATTATCTTAATTCTCAGTTGTACTATCGCTGCTGGTGTTCAATTTGGTTGGGCATTACAGCTTTCCCTACTAACTCCCTATATTCAGACACTCGGAATTGAGCATGCATTTTCTTCGTTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTCGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATCCTGGGAGATACGAAGGAACACTGCAGAATATATAAGGGTACACGAACGAGGGCGGCTATTATCTTTGTAGTAGGCTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCGGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTGTTGCTGTGCTTTTTCTAACCATATGTACTCTTGTTACCTTATATTTTGCCGATGAAGTTCCACTTACTGCTGTAGATCAACCACCACGTTTATCAGATTCTGCTCCTTTGTTGAATGGGAATGAACAAAATAGTCCTAATATTTTAAAACCAGAACATAACAGTCTGACTGGGAGCAATGTTGACTATGGCTATCAAGAAAATATGGATTTGAAAAATTCAAAATCAAAAATTGAGGAAAACCACAGTGAAGGTTATTATGATGGTCCTGCAACAGTGGTAGTCAAATTGTTGTCGAGTTTAAGACATTTACCACCGGCCATGCATTCTGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTCGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTTTGACTGAAGAACAGGTTTATGATCAGGGTGTCAGGGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTTATTGAGCCAATGTGTCAGCGTATGGGAGCAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGTTGGGAACTACTATTATCAGTTTAATATCCGTCAGTCAATACTCTGAAGGAATTGAACATATTATTGGAGGAAATTCAACGATAAAAAATGCTGCCTTGGCTGTCTTTGCTCTTCTTGGTTTTCCTCTTGCTGTAAATGTCAAAGTCTCTTTTTAA 1560 41.86 MAGKPNSVSFRVPYRNLQDAEVEMVAVDEQQLQGIDLNSPSSDTCPNGNADNSSSTPHVRSTPNSLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRIYKGTRTRAAIIFVVGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSDACCEACGNLKAAFLVAVLFLTICTLVTLYFADEVPLTAVDQPPRLSDSAPLLNGNEQNSPNILKPEHNSLTGSNVDYGYQENMDLKNSKSKIEENHSEGYYDGPATVVVKLLSSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTEEQVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAMSNFIVFACMLGTTIISLISVSQYSEGIEHIIGGNSTIKNAALAVFALLGFPLAVNVKVSF 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63089181 63095109 + Tan0005492.2 Tan01g2895 740319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2895 519 Gene3D MFS general substrate transporter like domains 62 517 IPR036259 -
Tan01g2895 519 CDD MFS_SLC45_SUC 69 513 - -
Tan01g2895 519 SUPERFAMILY MFS general substrate transporter 68 475 IPR036259 -
Tan01g2895 519 MobiDBLite consensus disorder prediction 38 59 - -
Tan01g2895 519 PANTHER SUGAR TRANSPORTER 65 518 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Tan01g2895 519 Pfam Major Facilitator Superfamily 76 483 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Tan01g2895 519 FunFam Sucrose transporter SUC2 67 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2895 K15378 - - csv:101205348 948.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2895 Tan-Chr1:63089181 Tan02g1470 Tan-Chr2:59008354 1.70E-93 dispersed
Tan01g2894 Tan-Chr1:63089181 Tan01g2895 Tan-Chr1:63089181 1.40E-301 tandem
Tan01g2895 Tan-Chr1:63089181 Tan01g2896 Tan-Chr1:63089181 4.30E-214 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1470 . 13 485 Sucrose Transporter Gene Family AT1G22710 64.6 1.1e-182 637.1
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT2G14670 63.4 4.0e-177 618.6
Tan02g1470 . 12 410 Sucrose Transporter Gene Family AT1G66570 62.1 4.8e-148 521.9
Tan01g2894 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2896 . 7 459 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2895 . 152 519 Sucrose Transporter Gene Family AT2G02860 66.0 9.8e-141 497.7
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT5G06170 61.3 1.9e-166 583.2
Tan02g1470 . 21 480 Sucrose Transporter Gene Family AT5G43610 64.7 1.4e-174 610.1
Tan02g2516 . 16 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.5e-195 679.9
Tan02g1470 . 19 490 Sucrose Transporter Gene Family AT1G09960 52.4 1.4e-135 480.7
Tan02g1470 . 13 492 Sucrose Transporter Gene Family AT1G71880 61.4 4.1e-172 602.1
Tan02g1470 . 21 485 Sucrose Transporter Gene Family AT1G71890 61.1 1.1e-166 583.9
Tan02g1470 . 13 492 Sucrose Transporter Gene Family AT1G71880 61.4 4.1e-172 602.1
Tan02g1470 . 13 485 Sucrose Transporter Gene Family AT1G22710 64.6 1.1e-182 637.1
Tan01g2894 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2896 . 7 459 Sucrose Transporter Gene Family AT2G02860 69.5 7.2e-184 641.0
Tan01g2895 . 152 519 Sucrose Transporter Gene Family AT2G02860 66.0 9.8e-141 497.7
Tan02g2516 . 16 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.5e-195 679.9
Tan02g1470 . 19 490 Sucrose Transporter Gene Family AT1G09960 52.4 1.4e-135 480.7
Tan02g1470 . 21 485 Sucrose Transporter Gene Family AT1G71890 61.1 1.1e-166 583.9
Tan02g1470 . 21 480 Sucrose Transporter Gene Family AT5G43610 64.7 1.4e-174 610.1
Tan02g1470 . 12 410 Sucrose Transporter Gene Family AT1G66570 62.1 4.8e-148 521.9
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT2G14670 63.4 4.0e-177 618.6
Tan02g1470 . 8 480 Sucrose Transporter Gene Family AT5G06170 61.3 1.9e-166 583.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41