Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3001 ATGACCTTACCGGTAACTGCCATGAACTTCTTGGTATTTTTTAGACAGGTGGTCTCTGTCTTGTTCTTGGGCAGAATTGGAAGCCTGGAGCTAGCAGGTGGTGCACTTGCAATAGGATTTACAAATATCACAGGTTATTCTGTTATGGTGGGTTTAGCCGCTGGGTTGGAACCCATATGCAGCCAAGCCTACGGAAGCAAAAATTGGGATCTCCTCTGTCTTTCTCTGCAACGCATGATCTTAATCCTCCTCTTTGCAACCATACCCATTGGGTTTCTCTGGCTCAACCTTGACAACATCATGGTATTTTTAGGCCAAGATCCACAAATCACAAGGATGGCGGCTATTTACTGTATTTATTCTCTTCCAGACCTTTTAACAAACACCTTGCTGCAACCATTAAAAACCTTTTTAAGGTCACAAAAGGACACGAAACCCATGATGTATTGCACTCTAGTAGCAGTTGGTCTTCATGTGCCTCTGAATTACGTGATGGTGGTGGTGCTGGGGATGGGATTGCAAGGAGTGGCGATGGCTTCGGTGCTAACAAATTTGAACATTGTGGGATTGATGTCAGGATACGTGTGGGTGTGGGGGAGGAAAGGGGAGATGAGATGGACGTTGAAGGTGGGAGAGGTTTGTGGAGGCGTGGGGCCAGTGATGAAGTTGGCTGTACCGAGTTGCTTGGGAATATGTTTGGAGTGGTGGTGGTATGAAATAGTGACAGTGTTGTCTGGTTATTTGTCCAATCCAACGTCGGCTGTGGCCGCCACTGGGATTCTCATCCAAACTACAAGCATGATGTACACCGTACCCTTGGCCCTCGCTGGTTGCGTCTCCGCCAGGGTAGGGAATGAGCTGGGAAGTGGAAAGCCAAAGAAAGCAAAAGTTGCAGCAAGAGTGGCATTGGGATGTGCATTTGTGATAGGCGGAATCAACGTGACGTGGACGGTGATTCTGAGACGGACATGGGCCAGGCTTTTCACAGATGATATGTTGGTTAAATCATTGGTGTCTTCAGCTTTGCCAATCATAGGCCTCTGTGAGCTTTGGAACTGCCCGCAGACCACGGGATATGGCATCCTACGTGGCACTGCCCGTCCTGCTGTGGGTGCTCGTATCAACTTGGCTTCTTTTTACCTAGTGGGCACTCCTGTTGCTCTGGGCCTCGCCTTTGGGCTTAGACTTGGTTTTGTTGGGCTTTGGTTTGGGCTGCTCTCAGCCCAGGTCGCCTGTGCTGCGTCCATGCTCTATGTGGTTGTGTCCAACACTGATTGGGAGGCTGAGGCTTTGAGAGCTAAGAAACTGACTGGTTTGGAAATGAATGCCACCAATGGCAATGCTGCAGAAGAGGAAACTAAGAAATTACTTGATGAAAATGGGCCTCAACATTATGTCTTATAG 1404 48.5 MTLPVTAMNFLVFFRQVVSVLFLGRIGSLELAGGALAIGFTNITGYSVMVGLAAGLEPICSQAYGSKNWDLLCLSLQRMILILLFATIPIGFLWLNLDNIMVFLGQDPQITRMAAIYCIYSLPDLLTNTLLQPLKTFLRSQKDTKPMMYCTLVAVGLHVPLNYVMVVVLGMGLQGVAMASVLTNLNIVGLMSGYVWVWGRKGEMRWTLKVGEVCGGVGPVMKLAVPSCLGICLEWWWYEIVTVLSGYLSNPTSAVAATGILIQTTSMMYTVPLALAGCVSARVGNELGSGKPKKAKVAARVALGCAFVIGGINVTWTVILRRTWARLFTDDMLVKSLVSSALPIIGLCELWNCPQTTGYGILRGTARPAVGARINLASFYLVGTPVALGLAFGLRLGFVGLWFGLLSAQVACAASMLYVVVSNTDWEAEALRAKKLTGLEMNATNGNAAEEETKKLLDENGPQHYVL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73527717 73534364 + Tan0014700.5 Tan01g3001 740425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3001 467 NCBIfam MATE family efflux transporter 4 402 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Tan01g3001 467 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 428 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Tan01g3001 467 Pfam MatE 226 387 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Tan01g3001 467 Pfam MatE 4 164 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Tan01g3001 467 CDD MATE_eukaryotic 3 430 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3001 K03327 - - csv:101219797 833.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2999 Tan-Chr1:73527717 Tan01g3001 Tan-Chr1:73527717 7.20E-267 dispersed
Tan01g3001 Tan-Chr1:73527717 Tan06g2694 Tan-Chr6:79371999 2.60E-125 dispersed
Tan01g3000 Tan-Chr1:73527717 Tan01g3001 Tan-Chr1:73527717 7.20E-267 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1288 Blo01g01755 . . . Bpe02g00187 . . Bma01g02538 . . . Cma09g01151 Car01g00842 . . Cpe06g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01162 . . . . . . Bhi09g01574 Tan01g3001 . . . . . Cla09g00968 Cam09g1019 Cec09g1023 Cco09g1034 . . Cre09g0985 . . . Cme01g00744
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006122 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 39