Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3002 ATGATAAAGCAAGCGCATTCATTGTTTCAAATTCCCAACAAAATCCAATTCATTAGAAGCATTAGCAGACTCAGATTCTGTTCGTCGATCCTTCATTCCTCTGCCTTCCAAATCAAACCGCTGGGGAATCTCACTTCCACTCGTTCCCGCAACCACCATCGCCGGCCGCCCATGGCCACCGCCTCCGCCGCCGCCTCCGCCTCCGCGGCGGATAACCCTTCATCCACCTCTTCTTTCTCCTCCAACCCTTTCATTTTCTCCCCCGATTCTCCCCCTAGGCTCGCTCTCTCACCCCATCAGATTAAGCTTTGTTTCGAAGCACTTGGGGCCTTCAGGGAGAAGCTCCAGATGCCTAATATGATCAATCAGGAGTTTGCCCGATTACAGGCCACGAGAATAACTGGACTTGATATGAGGCGAAATTGCTCTGTGGCTCTTGACACTGTGAACATAAATAAAAATCGTTACACGGATGTAATACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGTTATATAAATGCAAGCTTTATTTCGAGTTCCTCCTCAAAAAGCCTTTCTACGTTTATTGCCACACAAGGTCCACTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATCTAGTTGTCGTCTCTAAATGGATAAGATCTTCCAACTCCTCTCTCATACTGCGTCATTTGGAGGTGAACCATAAAGAGTCAGAAGAGTCTGTGGCTGTTCTGCATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTACTGACACACTTGCAGTTCGTGAAATGTTGAAGAGGTTGTATCATTTACCTCCTGATCTTGGCCCAATAGTGGTTCACTGCAGTGCAGGTATTGGAAGAACTGGAACGTATTGCACAATTCATAACACAATTCAGAGAATCCTTATCGGAGACATGTCTGCTTTAGATCTTGTCAGCACCATTTCCACATTTAGGTCCCAACGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTACCGAACTATTGTTGATGAACTAGAAGACCTTATATCTGTTCCACAATAG 1197 44.53 MIKQAHSLFQIPNKIQFIRSISRLRFCSSILHSSAFQIKPLGNLTSTRSRNHHRRPPMATASAAASASAADNPSSTSSFSSNPFIFSPDSPPRLALSPHQIKLCFEALGAFREKLQMPNMINQEFARLQATRITGLDMRRNCSVALDTVNINKNRYTDVIPFDETRVVLDSCKDYRPSARGYINASFISSSSSKSLSTFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMKCGDYFQAEDGPRDFGNLVVVSKWIRSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPTDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCTIHNTIQRILIGDMSALDLVSTISTFRSQRIGMVQTLDQYFFCYRTIVDELEDLISVPQ 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73637286 73658328 + Tan0006000.1 Tan01g3002 740426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3002 398 CDD PTPc_plant_PTP1 182 383 - -
Tan01g3002 398 ProSitePatterns Tyrosine specific protein phosphatases active site. 326 336 IPR016130 GO:0016311(InterPro)
Tan01g3002 398 PRINTS Protein tyrosine phosphatase signature 323 341 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 PRINTS Protein tyrosine phosphatase signature 199 219 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 PRINTS Protein tyrosine phosphatase signature 356 371 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 PRINTS Protein tyrosine phosphatase signature 285 302 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 PRINTS Protein tyrosine phosphatase signature 181 188 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 PRINTS Protein tyrosine phosphatase signature 372 382 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 SMART PTPc_3 120 391 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 FunFam Tyrosine-protein phosphatase non-receptor type 12 98 396 - -
Tan01g3002 398 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 391 IPR029021 -
Tan01g3002 398 Pfam Protein-tyrosine phosphatase 150 387 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 51 390 IPR050348 GO:0004725(PANTHER)
Tan01g3002 398 SMART ptp_7 286 388 IPR003595 -
Tan01g3002 398 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 305 380 IPR000387 GO:0016311(InterPro)
Tan01g3002 398 Gene3D Protein tyrosine phosphatase superfamily 100 395 IPR029021 -
Tan01g3002 398 ProSiteProfiles PTP type protein phosphatase domain profile. 121 389 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3002 398 MobiDBLite consensus disorder prediction 45 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3002 Tan-Chr1:73637286 Tan01g3003 Tan-Chr1:73637286 4.50E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3002 - - - 0.0