Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3002 | ATGATAAAGCAAGCGCATTCATTGTTTCAAATTCCCAACAAAATCCAATTCATTAGAAGCATTAGCAGACTCAGATTCTGTTCGTCGATCCTTCATTCCTCTGCCTTCCAAATCAAACCGCTGGGGAATCTCACTTCCACTCGTTCCCGCAACCACCATCGCCGGCCGCCCATGGCCACCGCCTCCGCCGCCGCCTCCGCCTCCGCGGCGGATAACCCTTCATCCACCTCTTCTTTCTCCTCCAACCCTTTCATTTTCTCCCCCGATTCTCCCCCTAGGCTCGCTCTCTCACCCCATCAGATTAAGCTTTGTTTCGAAGCACTTGGGGCCTTCAGGGAGAAGCTCCAGATGCCTAATATGATCAATCAGGAGTTTGCCCGATTACAGGCCACGAGAATAACTGGACTTGATATGAGGCGAAATTGCTCTGTGGCTCTTGACACTGTGAACATAAATAAAAATCGTTACACGGATGTAATACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGTTATATAAATGCAAGCTTTATTTCGAGTTCCTCCTCAAAAAGCCTTTCTACGTTTATTGCCACACAAGGTCCACTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATCTAGTTGTCGTCTCTAAATGGATAAGATCTTCCAACTCCTCTCTCATACTGCGTCATTTGGAGGTGAACCATAAAGAGTCAGAAGAGTCTGTGGCTGTTCTGCATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTACTGACACACTTGCAGTTCGTGAAATGTTGAAGAGGTTGTATCATTTACCTCCTGATCTTGGCCCAATAGTGGTTCACTGCAGTGCAGGTATTGGAAGAACTGGAACGTATTGCACAATTCATAACACAATTCAGAGAATCCTTATCGGAGACATGTCTGCTTTAGATCTTGTCAGCACCATTTCCACATTTAGGTCCCAACGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTACCGAACTATTGTTGATGAACTAGAAGACCTTATATCTGTTCCACAATAG | 1197 | 44.53 | MIKQAHSLFQIPNKIQFIRSISRLRFCSSILHSSAFQIKPLGNLTSTRSRNHHRRPPMATASAAASASAADNPSSTSSFSSNPFIFSPDSPPRLALSPHQIKLCFEALGAFREKLQMPNMINQEFARLQATRITGLDMRRNCSVALDTVNINKNRYTDVIPFDETRVVLDSCKDYRPSARGYINASFISSSSSKSLSTFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMKCGDYFQAEDGPRDFGNLVVVSKWIRSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPTDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCTIHNTIQRILIGDMSALDLVSTISTFRSQRIGMVQTLDQYFFCYRTIVDELEDLISVPQ | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 73637286 | 73658328 | + | Tan0006000.1 | Tan01g3002 | 740426 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3002 | 398 | CDD | PTPc_plant_PTP1 | 182 | 383 | - | - | |
Tan01g3002 | 398 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 326 | 336 | IPR016130 | GO:0016311(InterPro) | |
Tan01g3002 | 398 | PRINTS | Protein tyrosine phosphatase signature | 323 | 341 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | PRINTS | Protein tyrosine phosphatase signature | 199 | 219 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | PRINTS | Protein tyrosine phosphatase signature | 356 | 371 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | PRINTS | Protein tyrosine phosphatase signature | 285 | 302 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | PRINTS | Protein tyrosine phosphatase signature | 181 | 188 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | PRINTS | Protein tyrosine phosphatase signature | 372 | 382 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | SMART | PTPc_3 | 120 | 391 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | FunFam | Tyrosine-protein phosphatase non-receptor type 12 | 98 | 396 | - | - | |
Tan01g3002 | 398 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 102 | 391 | IPR029021 | - | |
Tan01g3002 | 398 | Pfam | Protein-tyrosine phosphatase | 150 | 387 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | PANTHER | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE | 51 | 390 | IPR050348 | GO:0004725(PANTHER) | |
Tan01g3002 | 398 | SMART | ptp_7 | 286 | 388 | IPR003595 | - | |
Tan01g3002 | 398 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 305 | 380 | IPR000387 | GO:0016311(InterPro) | |
Tan01g3002 | 398 | Gene3D | Protein tyrosine phosphatase superfamily | 100 | 395 | IPR029021 | - | |
Tan01g3002 | 398 | ProSiteProfiles | PTP type protein phosphatase domain profile. | 121 | 389 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Tan01g3002 | 398 | MobiDBLite | consensus disorder prediction | 45 | 78 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3002 | Tan-Chr1:73637286 | Tan01g3003 | Tan-Chr1:73637286 | 4.50E-179 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3002 | - | - | - | 0.0 |