Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3003 ATGATAAAGCAAGCGCATTCATTGTTTCAAATTCCCAACAAAATCCAATTCATTAGAAGCATTAGCAGACTCAGATTCTGTTCGTCGATCCTTCATTCCTCTGCCTTCCAAATCAAACCGCTGGGGAATCTCACTTCCACTCGTTCCCGCAACCACCATCGCCGGCCGCCCATGGCCACCGCCTCCGCCGCCGCCTCCGCCTCCGCGGCGGATAACCCTTCATCCACCTCTTCTTTCTCCTCCAACCCTTTCATTTTCTCCCCCGATTCTCCCCCTAGGCTCGCTCTCTCACCCCATCAGATTAAGCTTTGTTTCGAAGCACTTGGGGCCTTCAGGGAGAAGCTCCAGATGCCTAATATGATCAATCAGGAGTTTGCCCGATTACAGGCCACGAGAATAACTGGACTTGATATGAGGCGAAATTGCTCTGTGGCTCTTGACACTGTGAACATAAATAAAAATCGTTACACGGATGTAATACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGTTATATAAATGCAAGCTTTATTTCGAGTTCCTCCTCAAAAAGCCTTTCTACGTTTATTGCCACACAAGGTCCACTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATCTAGTTGTCGTCTCTAAATGGATAAGATCTTCCAACTCCTCTCTCATACTGCGTCATTTGGAGGTGAACCATAAAGAGTCAGAAGAGTCTGTGGCTGTTCTGCATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTACTGACACACTTGCAGTTCGTGAAATGTTGAAGAGGTTGTATCATTTACCTCCTGATCTTGGCCCAATAGTGGTTCACTGCAGGTAG 990 45.76 MIKQAHSLFQIPNKIQFIRSISRLRFCSSILHSSAFQIKPLGNLTSTRSRNHHRRPPMATASAAASASAADNPSSTSSFSSNPFIFSPDSPPRLALSPHQIKLCFEALGAFREKLQMPNMINQEFARLQATRITGLDMRRNCSVALDTVNINKNRYTDVIPFDETRVVLDSCKDYRPSARGYINASFISSSSSKSLSTFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMKCGDYFQAEDGPRDFGNLVVVSKWIRSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPTDTLAVREMLKRLYHLPPDLGPIVVHCR 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 73637286 73658328 + Tan0006000.2 Tan01g3003 740427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3003 329 Gene3D Protein tyrosine phosphatase superfamily 99 329 IPR029021 -
Tan01g3003 329 PRINTS Protein tyrosine phosphatase signature 181 188 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3003 329 PRINTS Protein tyrosine phosphatase signature 323 329 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3003 329 PRINTS Protein tyrosine phosphatase signature 199 219 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3003 329 PRINTS Protein tyrosine phosphatase signature 285 302 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3003 329 SMART PTPc_3 120 329 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3003 329 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 328 IPR029021 -
Tan01g3003 329 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 51 328 IPR050348 GO:0004725(PANTHER)
Tan01g3003 329 MobiDBLite consensus disorder prediction 45 78 - -
Tan01g3003 329 Pfam Protein-tyrosine phosphatase 150 328 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Tan01g3003 329 ProSiteProfiles PTP type protein phosphatase domain profile. 121 329 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3002 Tan-Chr1:73637286 Tan01g3003 Tan-Chr1:73637286 4.50E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3003 - - - 0.0