Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3006 ATGGATCCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCTTTTCCTAATATTAATGCCCAGCAACCTGCACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGACCAGCCTTTTCAAGAATTCGAAGAACAGAACGAATCGAAGGCCTCCCTAACCTGTAACTCAAATCAACAAATCGAAATCCTAAATAAAGATAGTGATCAGATGAATGCAGCACTTATAGCCAGTAAAATTCAAGATTGGGACCCAAGAGCGATGCTAAATAATCTGTCCTTCCTTGAGCAGAAGATTCATCAGCTACAGGAACTTGTGCATTTTATCGTTGGTCGGAGGAGCCAAGTCTTGGGGAGGCCGGATGAACTCGTAGTTCAGCAACAACAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATTTCAACAGCGGGTAGTCTGCTTCCTTCTGTAAAGCATAACTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGCTGGAGCAGCTCGACAGGGTTCTTTTCGCATCTGGATCCGGGACGAATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACTAAACATCCCGAGCTTCCGACCCAAATGGACGAAAATAGCAAGTGTGGGAAGGAACAGAACATGACTGTTGAAGAACACGAATCGAAGGATGAAGAAGATGTAGATGAAAGCGAGAACCTCCCACCCGGTTCATATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCTCCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCATGGTGACGAGTACAAAACCGCTGCTGCTCTTGCAAAGCCGAACAAGGAACTGAGTTCCGAGGCGATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAAAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCCAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTTGACGAATCAAAGGGAATGGCCATGTCATGTGATCGAGGAGAACGCTACGAAACAACGAATAAGCTCGGGAGTATAAATTTCAGTTTTGGATCGATTGCTTCGGGGGGAAGCTCAGTTGAAACCATAGCAGAAGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTTTCGCCTCTGAACTTCGATTCGTGTAATTTCGGTGGCTTTCATGAGTTTCCTCGACCACCATTCGAGAACACAGAGAATGCGTTTTCGTTCCTTATCCCGGCATCTAGCAACTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAACCTTGAATGA 1542 43.9 MDPEDSLCSSEVWTKSSSFPNINAQQPAQKWVDTSILDYAMDQPFQEFEEQNESKASLTCNSNQQIEILNKDSDQMNAALIASKIQDWDPRAMLNNLSFLEQKIHQLQELVHFIVGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEQLDRVLFASGSGTNNGGVQSQHGDGTKHPELPTQMDENSKCGKEQNMTVEEHESKDEEDVDESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELSSEAMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGMAMSCDRGERYETTNKLGSINFSFGSIASGGSSVETIAEAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTENAFSFLIPASSNYTQKSGAESSSNNLE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74073248 74076360 - Tan0006454.1 Tan01g3006 740430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3006 513 SMART c2h2final6 309 342 IPR013087 -
Tan01g3006 513 SMART c2h2final6 260 282 IPR013087 -
Tan01g3006 513 SMART c2h2final6 347 369 IPR013087 -
Tan01g3006 513 SUPERFAMILY beta-beta-alpha zinc fingers 258 286 IPR036236 -
Tan01g3006 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 55 492 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Tan01g3006 513 Gene3D Classic Zinc Finger 244 315 - -
Tan01g3006 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Tan01g3006 513 MobiDBLite consensus disorder prediction 183 240 - -
Tan01g3006 513 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3006 Tan-Chr1:74073248 Tan03g1851 Tan-Chr3:73998951 1.50E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26482 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3006 - - - 0.0