Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3026 ATGGCGGACGTGATGCTGATGAAGGAGATTGAGGACACGGCTGGTCAGCTTGGGATAGATCTTTGCCAAGTTGATTTTGATTCCATTCGTCTCCCTCCTGGCGAGGATTTTGATATCATTAGTGATGATGAAGAGGTTATACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGATAATCTTCCAGTTGTTCCTCCAGAGAAATTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGTCTGTGGATGCCTGTTGATCCTGCTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAATTGGATAGAGCACATATTTTCACTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATATACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTAGTTCTGACACTGAGGTCTTCTGGAATGATGCTAGACATTTGAAGCCCGAGCCTGTCTACAAGCGTCCATTCTGGACCGAGAGTTTTGTGCAGTGGTCTTCCTTGGGGACTTTCCTAGCAACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGTGCAGGTACCTTTAACCGTCTGATGCGTTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCCGGTGAGAAATATCTGGTAACTTACAGCAGTCATGAGCCCAGCAATCCTCGTGATGTAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCAGGCGTATCATGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGACGACAAGTACTTCGCCAGGATTGGAAAAAATGTGGTCTCTGTCTATGAAACAGAGACTTTCTCACTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTATTGCACTTTATGTTCCTGAGCTAGGTGGTGGGAACCAACCAGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGTAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATCGATATACAAAGACGAAGAAAAGCACGTACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGACAAGATCGTTGCATTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCACGGTGACAACCCAAGGCCAGATATAAGCTTTTACTCGATGCGAAGCGCTCACAACAGTGGCCGAGTATCAAAACTTGCAACTCTCAAAGGCAAGCAGGCCAATGCTCTATTCTGGTCACCTGCTGGACGCTTCATTATTCTTGCTGGACTGAAAGGTTTCAATGGACAGTTGGAATTCTACAATGTCGATGACCTGGAGACAATGGCAACTGCTGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTACATGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAGCTCCTCTACCGAATATTGAAAGATCATTTCTTCCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGACTCCCGAGAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTATGAGGCCGAAGACCAGGATGTATCTCTGCTACTGAGCGAGCAGGATCGCGAGAAACGGAGAATGTTGAAGGACGGATGGGAGAAGTGGGTGAATGAATGGAAGAGATTGCATGAAGAAGAGAAGCTGTTGCGTCAGAAACTGCGGGATGGCGAAGCGAGTGACGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTGGAAGAAATTTTGGACGTGTCGGAGGAAGTTTTGTCGTTTGATTTTGGGCAGGAATGA 2160 44.26 MADVMLMKEIEDTAGQLGIDLCQVDFDSIRLPPGEDFDIISDDEEVIQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPATQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSSSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTFLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDVNRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVVSVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALYVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIVAFAWEPKGHRFAVIHGDNPRPDISFYSMRSAHNSGRVSKLATLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRRMLKDGWEKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75357720 75363600 - Tan0017873.3 Tan01g3026 740450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3026 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 31 708 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan01g3026 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Tan01g3026 719 SMART rrm1_1 61 143 IPR000504 GO:0003723(InterPro)
Tan01g3026 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723(InterPro)
Tan01g3026 719 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676(InterPro)
Tan01g3026 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Tan01g3026 719 CDD RRM_eIF3B 59 143 IPR034363 -
Tan01g3026 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan01g3026 719 Coils Coil 687 707 - -
Tan01g3026 719 Gene3D - 180 436 IPR015943 GO:0005515(InterPro)
Tan01g3026 719 Gene3D - 55 154 IPR012677 -
Tan01g3026 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Tan01g3026 719 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan01g3026 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Tan01g3026 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Tan01g3026 719 Gene3D - 441 621 IPR015943 GO:0005515(InterPro)
Tan01g3026 719 Pfam RNA recognition motif 82 136 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3024 Tan-Chr1:75357720 Tan01g3026 Tan-Chr1:75357720 0.00E+00 dispersed
Tan01g3026 Tan-Chr1:75357720 Tan09g2383 Tan-Chr9:73525402 0.00E+00 dispersed
Tan01g3025 Tan-Chr1:75357720 Tan01g3026 Tan-Chr1:75357720 0.00E+00 tandem
Tan01g3026 Tan-Chr1:75357720 Tan01g3027 Tan-Chr1:75357720 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3026 K03253 - csv:101213144 1414.82