Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g3145 | ATGGGAGTGCTTGAAATTGTCAAAAACATCGGCAGCGACCACGCCCAAGTCGTCCCCTTGACGTTGTTCGTCGCCGTTCTCTGTTTTTGCTTGGTTGTTGGCCACTTGCTCGAAGAAAATCGATGGGTTAATGAATCCATCACTGCCATTATCATTGGAGGTGTTACTGGAACGGTCATATTGGTCTGTAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTGTTCTTCATATATCTCCTTCCACCAATTATTTTCAATGCTGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCATAACTTCTTGACCATTATGCTGTTTGGGGTGATTGGTGTCTTTATATCTGCACTCATTATAACGTCTGGTAGCCAGTGGCTGTTCCCAAGAATGGGCTTCCATGGTCTGTCAGCACGGGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACCCTGCAGGTACTACACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAGGCTTAACAGAAAGACAGTCCTCCATCTTTTTGGAGACTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACCACCGGGCTTCTAACAGCATATATCCTGAAAACCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTGTCTTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACAGATAGTTCAAAAATTACCACCAGGCATGTATTTGCAATGATGTCATTTGTTGCTGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATAACTAAATTAAGGTTGTGGAAGTTGCTAGGTACATATAGCATTATAGTCTTCTTGATATTGCTTGGTCGTGCAGCCTTTGTATTTCCCCTATCTGCTCTATCTAATTACTTCATCAAGCGTGAAGATAGATCATCATCAACTTCTATGATCTCTTTTAAACAACAGATCATTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCGATTGCTCTGGCTTTCAAACAGTTCACATATTCTGGGGTTACATTGGATCCAACCCATGCAACAATGATTACCATCACCACAGTTGTTGTACTATTCACTACAGTGGTATTTGGGTTTCTAACAAAGCCGCTCATAAGATGTCTACTTCCACCCAACCAAGCAACTAACAATGCAAGCAACTCCAGCCCAAAGTTCACCGAAGAGGACATAACTCTCCCTTTCCTCTCCATGGAAGAGTCTGCTGCGACCAACGTCCTTCGTGCAAAGGATAGTTTGTCAATGTTAATAGAGAGACCTGTTTACACCATACACTTCTTTTGGAGGAAATTTGATGATACCTACATGAGACCTATATTCGGAGGGCCTCGCCACAATCAACCTAGTGGTTCCGGTTGTTAG | 1587 | 42.22 | MGVLEIVKNIGSDHAQVVPLTLFVAVLCFCLVVGHLLEENRWVNESITAIIIGGVTGTVILVCSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISALIITSGSQWLFPRMGFHGLSARDYIAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNRKTVLHLFGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDSSKITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLRLWKLLGTYSIIVFLILLGRAAFVFPLSALSNYFIKREDRSSSTSMISFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTLDPTHATMITITTVVVLFTTVVFGFLTKPLIRCLLPPNQATNNASNSSPKFTEEDITLPFLSMEESAATNVLRAKDSLSMLIERPVYTIHFFWRKFDDTYMRPIFGGPRHNQPSGSGC | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 84949977 | 84961392 | - | Tan0018811.1 | Tan01g3145 | 740569 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g3145 | 528 | Gene3D | - | 139 | 191 | - | - | |
| Tan01g3145 | 528 | PRINTS | Na+/H+ exchanger signature | 78 | 89 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g3145 | 528 | PRINTS | Na+/H+ exchanger signature | 147 | 157 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g3145 | 528 | PRINTS | Na+/H+ exchanger signature | 107 | 115 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g3145 | 528 | PRINTS | Na+/H+ exchanger signature | 92 | 106 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g3145 | 528 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 520 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Tan01g3145 | 528 | NCBIfam | sodium/hydrogen exchanger 3 | 20 | 452 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Tan01g3145 | 528 | Pfam | Sodium/hydrogen exchanger family | 34 | 442 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g3145 | Tan-Chr1:84949977 | Tan09g0361 | Tan-Chr9:33754532 | 1.30E-168 | dispersed | |
| Tan01g3145 | Tan-Chr1:84949977 | Tan06g2626 | Tan-Chr6:78825591 | 2.80E-168 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g3145 | - | - | - | 0.0 |