Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3167 ATGGGTCACTCACAGATTCATAGAGAATCTGAAAAGCCGAATCTAGATTGGGAAGCAGCGCTGAAGCAGTATGAAAACGTTATGGCTTCAGAATCCGAGGCTGTTAAAGTGAAAGCCACAGTCAAATTGGCCCATCTCTCCAAACAGGCCCCCGAGAATATTTTGAACAGCACCATACCCATTATTGTCGTGCATCTTGAAGATAACCCCATCAATAATTCAAGCCAGTCCATGAAGGGAGCTGCTGCATATTGTCTCAGATGTATATCTTGTCATGGTGATGGTGCGTTGGCGACGGCGGTAGGTCATTCCGGCGCTTTAGAGTCTTTGCTGAGGTTATTGCCAAATTCTAGTGGTTATTTTCGTAAGATTCTAGTCAAATGTGTTTGGAGTATTGTTACTTTTGATAAAACTAGTCGTGTGATTCTAGCAAGAAATGGAGGTTTAGAAGTTATTATTAGTATGTTTGATTCTGTAATTGATGGCACTAGGAGATATTTGTTGGAGATTTTGAGTGCAATGGCACTATTGAGAGAGGTTAGGAAGGCCCTTATTAGTTTAAGAGGTCTCCCTTTTCTTGTGCAAGCTGCTAGATGTGGCTGCATGGCCTCCAGAGAAAGAGCTTGCCAAGCAATTGGGTTACTTGCAATTACAAAGCGTGGAAGACACATGCTTGTTGAGTTGGGAGTGTTTCCAGTGCTTATTGAGCTATTTGGTGAAGGAGATTATGTGACAAAACTGGTAGCTGGTAATGCCCTTGGAATTGTTTCAGCTCATGTAGCGTATATTAGGCCTGTTGCGCAAGCTGGTGCTATCCCTTTATTTGCTGATCTGCTTCAGTGGCCTGACCCTGTTGGTAAGGAGATTGCAGAGGATGTCTTCTGTCTCTTAGCTGTTGCCGAAGCGAATGCAATTCTAATTTCTGATCATCTAGTGAGAATTCTTAAAGAAGGTGATGATGGAGCAAAGGCTGCAGCTGCTGATGTTTTGTGGGATCTTTCCGGCTATAAGTACTCCATATCAGTTGTGCATAGTTCAGGAGCCATTCCAATTTTGGTGGATCTATTACAGCCGGATGGGAATGATGAAGTGAGGGAAAAAGTATCTGGAGCTATAGCCCAATTAAGTTATAATGAAACAGACAGGGTTGCACTTGCTGATGCAGGGGCTATCCAACGACTAATAGGGCTGTTACAAGATGAGTTAGAAGAACTGAAAGATAATGCTGCTGAGGCCCTTATAAATTTTTCTGAAGACCCCTTATACCATGATAGAGTATCTGAAGCAGTCAGCACTCCTGCTTTCCAGAATATGGAGGAAATAATGACCCATATTCGTGCTAATGAAAGGCACAGCACAAGGTCCCTGCGTCAAATGGGAATCGACCGACTTACAAGGGATCCAGATCTTCTCTAA 1416 43.15 MGHSQIHRESEKPNLDWEAALKQYENVMASESEAVKVKATVKLAHLSKQAPENILNSTIPIIVVHLEDNPINNSSQSMKGAAAYCLRCISCHGDGALATAVGHSGALESLLRLLPNSSGYFRKILVKCVWSIVTFDKTSRVILARNGGLEVIISMFDSVIDGTRRYLLEILSAMALLREVRKALISLRGLPFLVQAARCGCMASRERACQAIGLLAITKRGRHMLVELGVFPVLIELFGEGDYVTKLVAGNALGIVSAHVAYIRPVAQAGAIPLFADLLQWPDPVGKEIAEDVFCLLAVAEANAILISDHLVRILKEGDDGAKAAAADVLWDLSGYKYSISVVHSSGAIPILVDLLQPDGNDEVREKVSGAIAQLSYNETDRVALADAGAIQRLIGLLQDELEELKDNAAEALINFSEDPLYHDRVSEAVSTPAFQNMEEIMTHIRANERHSTRSLRQMGIDRLTRDPDLL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85287059 85289131 - Tan0016364.1 Tan01g3167 740591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3167 471 Gene3D - 293 448 IPR011989 -
Tan01g3167 471 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 358 414 - -
Tan01g3167 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 390 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 SUPERFAMILY ARM repeat 10 426 IPR016024 -
Tan01g3167 471 Gene3D - 164 292 IPR011989 -
Tan01g3167 471 Gene3D - 10 163 IPR011989 -
Tan01g3167 471 SMART arm_5 47 91 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 SMART arm_5 378 418 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 SMART arm_5 177 217 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 SMART arm_5 336 377 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 SMART arm_5 259 299 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 SMART arm_5 218 258 IPR000225 GO:0005515(InterPro)
Tan01g3167 471 Coils Coil 388 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3167 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g621 . . . . . . . . . . . . . . Sed04g3674 . . Bhi09g01736 Tan01g3167 Cmetu01g0479 . . Mch11g1246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012085 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 2 4 1 1 1 1 2 29