Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3170 ATGGCGGCTGTTACGATCTCATCGGAGGCAGAGACAGAGGCGTTCGTGGAGGTGAATCCGACCGGCCGGTACGGCCGATACGAGGAGCTTCTAGGCGCCGGGGCGGTGAAGAAAGTGTACAGAGCATTCGATCAAGAAGAAGGAATAGAAGTGGCTTGGAACCAAGTGAAGCTCCGGAAGTTCACAGACGATCCGGCGATGATGGAGCGGCTGTTCTCGGAGGTCCGGCTGCTCCGATCGCTGCAGAACGGAAACATAATCGCGCTGTACGACGTGTGGAGAGACGCCGAACACCAAACCCTAAACTTCATAACAGAGGTCTGCACCAGCGGCAATCTGAGAGAGTACAGAAAAAAGCACCGCCATGTGTCGATTAAGGCAGTGAAGAAATGGTCGAAACAGATGTTGAAAGGTTTGGATTATTTGCATTCTCATGATCCCTGTGTTATTCATAGAGATCTCAATTGCAGCAACGTCTTCGTCAATGGCCACATCGGCCAGGTGAAGATCGGCGACCTGGGGTTGGCGGCGACGGTGGGGAAGAGCCACTCAGCGCACTCAGTGATCGGGACTCCGGAGTTCATGGCGCCGGAGCTGTACGAAGAGAATTACACAGAAATGGTGGATATATACTCGTTTGGGCTATGTTTGTTGGAGATGGTGACTTTGGAAATTCCATACAGTGAATGTGAGAATGTGGCCAAGATCTACAGGAAAGTGTCGGCCGGAATCCGGCCGGCGGCGATGGAGAAAGTTGCAGACGGTGAAGTGAAGAGGTTCATTGATAAGTGCATTGGTCAGCCGAGGAGCCGCCCGTCGGCCGCCGAGCTTCTTCTTGATCCATTCTTTTATGGCGTTGATGATGATGAAAATGATAGTCTTCAAATTACAGATTGA 897 51.84 MAAVTISSEAETEAFVEVNPTGRYGRYEELLGAGAVKKVYRAFDQEEGIEVAWNQVKLRKFTDDPAMMERLFSEVRLLRSLQNGNIIALYDVWRDAEHQTLNFITEVCTSGNLREYRKKHRHVSIKAVKKWSKQMLKGLDYLHSHDPCVIHRDLNCSNVFVNGHIGQVKIGDLGLAATVGKSHSAHSVIGTPEFMAPELYEENYTEMVDIYSFGLCLLEMVTLEIPYSECENVAKIYRKVSAGIRPAAMEKVADGEVKRFIDKCIGQPRSRPSAAELLLDPFFYGVDDDENDSLQITD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85308391 85313430 + Tan0006677.1 Tan01g3170 740594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3170 298 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 284 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Tan01g3170 298 PIRSF TyrPK_CSF1-R 24 130 - -
Tan01g3170 298 PIRSF TyrPK_CSF1-R 123 279 - -
Tan01g3170 298 SUPERFAMILY Protein kinase-like (PK-like) 22 290 IPR011009 -
Tan01g3170 298 ProSiteProfiles Protein kinase domain profile. 25 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3170 298 FunFam Probable serine/threonine-protein kinase WNK1 9 106 - -
Tan01g3170 298 Gene3D Phosphorylase Kinase; domain 1 8 106 - -
Tan01g3170 298 Pfam Protein kinase domain 28 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3170 298 FunFam probable serine/threonine-protein kinase WNK9 108 289 - -
Tan01g3170 298 Gene3D Transferase(Phosphotransferase) domain 1 108 287 - -
Tan01g3170 298 CDD STKc_WNK 23 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1805 Tan-Chr1:19299309 Tan01g3170 Tan-Chr1:85308391 1.00E-135 dispersed
Tan01g1806 Tan-Chr1:19299309 Tan01g3170 Tan-Chr1:85308391 2.50E-105 dispersed
Tan01g3170 Tan-Chr1:85308391 Tan05g0964 Tan-Chr5:7942348 3.70E-125 dispersed
Tan01g3170 Tan-Chr1:85308391 Tan03g1173 Tan-Chr3:68064574 4.20E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67073 PF00069 Pkinase 2.60E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3170 K08867 - mdm:103448336 487.263