Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3175 ATGATGAGGATCTTCAATTTCCTCTGTAGTAATAATAATAATAATAATGGGATTTTTCTTCTTGTTGTTGTTTTTCTTCTGTTGTGTGTCGCCGGAGAGAGCTCCGGCGGCGGCGGAGTAGCAGCAGAGAGATATGCTATCAGTTGGGATGATTTGCGTGTGCATGGTCATCACCGGCCGGGGCTGAACTCCGGCGGGATGACGAATGGGAGTAGAATAATAGTGGTGGATAAAAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCCAATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGAATTTACAGAGAGAAGGTATCCATACCCATCACCAAGCCATATATTTCATTCATTGGAAATAAGAAACAAGTTACAAACACTGTTATAACATGGAACGACAAAGCGTCCGATAAGAATATCAATGGGGAGGAGCTCGGGACGTATAGAACAGCAACCGTTGCAATCGACTCCGACTATTTTTGTGCGACGGGAATCACATTCGAGAATACAGTTGTTGCAAAGCCAGGAGATAAGGGAAGACAAGCTGTGGCTCTAAGAATTACAGGAGATAAGGCCATGTTTTATAAAGCCAAATTCTTAGGACAACAAGACACACTTTTGGATGATATGGGTACTCATTATTTCTATCAATGTCACATTCAAGGAAATGTCGATTTCATATTTGGTCAAGCTAAATCACTCTACGAGGAATGTGTGATAACCTCCACAGCAGAGAACTACGGAGCAATAGCAGCACATCATCGGGGTTCAGCAGACGAAGACACCGGGTTCTCTTTCGTGCGCTGCGTGATCAATGGAAGTGGCAAAATACTCCTGGCAAGAGCATGGGGGAACCATTCAAGAACAATATATTCTTACAGTTACATTGAAGATATAATAACTCCATTAGGATGGAGTGACTGGAGCGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAAATGCAGGGGCAGTGGAGCTAACACAAAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTATCAAGAAGTGAGACCTTTTGTAGATAGGAGATACATCAACGGAGAACAATGGCTTAACTTATGA 1119 43.34 MMRIFNFLCSNNNNNNGIFLLVVVFLLLCVAGESSGGGGVAAERYAISWDDLRVHGHHRPGLNSGGMTNGSRIIVVDKNGSGDSTTVQGAVDMVPNNNKQRVKIYILPGIYREKVSIPITKPYISFIGNKKQVTNTVITWNDKASDKNINGEELGTYRTATVAIDSDYFCATGITFENTVVAKPGDKGRQAVALRITGDKAMFYKAKFLGQQDTLLDDMGTHYFYQCHIQGNVDFIFGQAKSLYEECVITSTAENYGAIAAHHRGSADEDTGFSFVRCVINGSGKILLARAWGNHSRTIYSYSYIEDIITPLGWSDWSDPSRQRTVVFGQYKCRGSGANTKGWVPWAKTFSYQEVRPFVDRRYINGEQWLNL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85355794 85358778 + Tan0007145.1 Tan01g3175 740599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3175 372 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 371 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Tan01g3175 372 Gene3D - 68 372 IPR012334 -
Tan01g3175 372 FunFam Pectinesterase 69 372 - -
Tan01g3175 372 Pfam Pectinesterase 74 366 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan01g3175 372 SUPERFAMILY Pectin lyase-like 71 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3175 Tan-Chr1:85355794 Tan07g1812 Tan-Chr7:69675466 1.60E-80 dispersed
Tan01g3175 Tan-Chr1:85355794 Tan02g1980 Tan-Chr2:88702693 4.70E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3175 K01051 - csv:101209316 572.778