Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3185 ATGGGTAGCAAAGAAGCGAGACAGCCGCTGCTACCAACGTCGTCTAATACTATTGGGACAAGAATCATAGATATTCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTTATACAGAGACCACTGGCACTAGTACGGCCACTTGTCCAGTTCCACGTTCGGGATTAGTTTTTGGAAATCTACGCCCGAGTTTCAGAAGAGTAGCCTTAGTTTTAATAATATACTTGGGTATAGGAACTCTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGGGAACAAACAAACGGAATAGTTGATGCCATTTACTTCACTATTGTGACAATGACAACCGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGCGCTTTTGTTTTCACTGGAATGGCCCTAGTTGGCCTAATACTAAGTAGTGCAGCCGATTATTTGGTAGAGAAGCAAGAAATCTTGCTAGTTAAGGCCTTGCATGCCAACAAAAATGGCCATTGTGACATTACAAAAGAATTTGATAGTGATAAAGCTAGAAACAAGTGTATTGTGGTGTTTCTCTTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTTGTTACCCTTGAGAAGTTGGATTTCATTGATGCCTTTTATTGTGTATGTTCTACCATCACTACGCTAGGCTATGGAGATAAAAGCTTCTCGACTAAGTGGGGGCGTATCTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAAAAGTCTCTGGTAAAGTGGGTTCTAAGTAAAAAGGTGACAAACTTAGACCTAGAGGTTGCGGATCTTGATGATGACGGGGTTGTCGGGGCTGCAGAATTTGTCATATACAAGCTGAAAGAGATGGGGAAAATCACAGAAGATGACATTTCACCTGTGTTGGAGGAATTTGAGAATCTTGATGTTGATCAGTCAGGAACCCTGTCCACATCTGATATAACACTTGCTCAATTGTCCTAA 1062 41.34 MGSKEARQPLLPTSSNTIGTRIIDIPRSKRRLRRTKSAPHADSPYTETTGTSTATCPVPRSGLVFGNLRPSFRRVALVLIIYLGIGTLCFYLVRYQIKGEQTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSSAADYLVEKQEILLVKALHANKNGHCDITKEFDSDKARNKCIVVFLFLLLFIISGTAFLVTLEKLDFIDAFYCVCSTITTLGYGDKSFSTKWGRIFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTNLDLEVADLDDDGVVGAAEFVIYKLKEMGKITEDDISPVLEEFENLDVDQSGTLSTSDITLAQLS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85590895 85594567 + Tan0002464.1 Tan01g3185 740609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3185 353 Gene3D - 69 163 - -
Tan01g3185 353 SUPERFAMILY Voltage-gated potassium channels 67 167 - -
Tan01g3185 353 Pfam Ion channel 198 271 IPR013099 -
Tan01g3185 353 Pfam Ion channel 78 158 IPR013099 -
Tan01g3185 353 SUPERFAMILY Voltage-gated potassium channels 188 287 - -
Tan01g3185 353 MobiDBLite consensus disorder prediction 29 54 - -
Tan01g3185 353 Gene3D - 176 281 - -
Tan01g3185 353 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 75 290 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Tan01g3185 353 FunFam Calcium-activated outward-rectifying potassium channel 1 69 164 - -
Tan01g3185 353 SUPERFAMILY EF-hand 280 348 IPR011992 -
Tan01g3185 353 ProSitePatterns EF-hand calcium-binding domain. 296 308 IPR018247 -
Tan01g3185 353 PRINTS Two pore domain K+ channel signature 114 142 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Tan01g3185 353 PRINTS Two pore domain K+ channel signature 230 239 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3185 Tan-Chr1:85590895 Tan05g1889 Tan-Chr5:65513505 4.30E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3185 K05389 - csv:101216032 588.186