Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3185 | ATGGGTAGCAAAGAAGCGAGACAGCCGCTGCTACCAACGTCGTCTAATACTATTGGGACAAGAATCATAGATATTCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTTATACAGAGACCACTGGCACTAGTACGGCCACTTGTCCAGTTCCACGTTCGGGATTAGTTTTTGGAAATCTACGCCCGAGTTTCAGAAGAGTAGCCTTAGTTTTAATAATATACTTGGGTATAGGAACTCTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGGGAACAAACAAACGGAATAGTTGATGCCATTTACTTCACTATTGTGACAATGACAACCGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGCGCTTTTGTTTTCACTGGAATGGCCCTAGTTGGCCTAATACTAAGTAGTGCAGCCGATTATTTGGTAGAGAAGCAAGAAATCTTGCTAGTTAAGGCCTTGCATGCCAACAAAAATGGCCATTGTGACATTACAAAAGAATTTGATAGTGATAAAGCTAGAAACAAGTGTATTGTGGTGTTTCTCTTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTTGTTACCCTTGAGAAGTTGGATTTCATTGATGCCTTTTATTGTGTATGTTCTACCATCACTACGCTAGGCTATGGAGATAAAAGCTTCTCGACTAAGTGGGGGCGTATCTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAAAAGTCTCTGGTAAAGTGGGTTCTAAGTAAAAAGGTGACAAACTTAGACCTAGAGGTTGCGGATCTTGATGATGACGGGGTTGTCGGGGCTGCAGAATTTGTCATATACAAGCTGAAAGAGATGGGGAAAATCACAGAAGATGACATTTCACCTGTGTTGGAGGAATTTGAGAATCTTGATGTTGATCAGTCAGGAACCCTGTCCACATCTGATATAACACTTGCTCAATTGTCCTAA | 1062 | 41.34 | MGSKEARQPLLPTSSNTIGTRIIDIPRSKRRLRRTKSAPHADSPYTETTGTSTATCPVPRSGLVFGNLRPSFRRVALVLIIYLGIGTLCFYLVRYQIKGEQTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSSAADYLVEKQEILLVKALHANKNGHCDITKEFDSDKARNKCIVVFLFLLLFIISGTAFLVTLEKLDFIDAFYCVCSTITTLGYGDKSFSTKWGRIFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTNLDLEVADLDDDGVVGAAEFVIYKLKEMGKITEDDISPVLEEFENLDVDQSGTLSTSDITLAQLS | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 85590895 | 85594567 | + | Tan0002464.1 | Tan01g3185 | 740609 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3185 | 353 | Gene3D | - | 69 | 163 | - | - | |
Tan01g3185 | 353 | SUPERFAMILY | Voltage-gated potassium channels | 67 | 167 | - | - | |
Tan01g3185 | 353 | Pfam | Ion channel | 198 | 271 | IPR013099 | - | |
Tan01g3185 | 353 | Pfam | Ion channel | 78 | 158 | IPR013099 | - | |
Tan01g3185 | 353 | SUPERFAMILY | Voltage-gated potassium channels | 188 | 287 | - | - | |
Tan01g3185 | 353 | MobiDBLite | consensus disorder prediction | 29 | 54 | - | - | |
Tan01g3185 | 353 | Gene3D | - | 176 | 281 | - | - | |
Tan01g3185 | 353 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 75 | 290 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
Tan01g3185 | 353 | FunFam | Calcium-activated outward-rectifying potassium channel 1 | 69 | 164 | - | - | |
Tan01g3185 | 353 | SUPERFAMILY | EF-hand | 280 | 348 | IPR011992 | - | |
Tan01g3185 | 353 | ProSitePatterns | EF-hand calcium-binding domain. | 296 | 308 | IPR018247 | - | |
Tan01g3185 | 353 | PRINTS | Two pore domain K+ channel signature | 114 | 142 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Tan01g3185 | 353 | PRINTS | Two pore domain K+ channel signature | 230 | 239 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3185 | Tan-Chr1:85590895 | Tan05g1889 | Tan-Chr5:65513505 | 4.30E-96 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3185 | K05389 | - | csv:101216032 | 588.186 |