Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3187 ATGGACCCGTCGTCAGTGCACAAGGCTCCTCCAGTTGAAGAAGATGAGTGGGACACCGATGGGTTCGTGATTCCCAGCTTGGGAATAGAAGAGACAGACCAAACTAAAGTTGGCTCTCCAAATGTAGAAATCCAAGAACCTCCTCCAAAGGCTAAAGAAGAGACGACGACAACGACGACGACGATCTATCTTGGCCCACATGGCGCGCCACCATCACAGTCAAAACAACAAGATTTGAACCCCGCCAATCGTAAGCAACGGTTAAAGCAGAAATTGAAGGAAGCAGATCGGAGGACCACGACGGGACGGGAGAATAAGTTGGAGAATTTGAGAGAGCTTGTAGGTGGTGGAAGATCAAGCACCAATATGCCAAAAGGTTCTTCTAGGGGCTGGCTTGACCCACATTGCCATGAGGCTCAGTTCGAGAAGTAA 432 49.54 MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEETDQTKVGSPNVEIQEPPPKAKEETTTTTTTIYLGPHGAPPSQSKQQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGRSSTNMPKGSSRGWLDPHCHEAQFEK 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85601581 85604932 - Tan0000770.1 Tan01g3187 740611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3187 143 MobiDBLite consensus disorder prediction 82 111 - -
Tan01g3187 143 MobiDBLite consensus disorder prediction 1 15 - -
Tan01g3187 143 MobiDBLite consensus disorder prediction 1 143 - -
Tan01g3187 143 PANTHER BNAA10G09820D PROTEIN 1 143 - -
Tan01g3187 143 MobiDBLite consensus disorder prediction 51 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3187 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g656 . . . . . . . . . . Cma01g01078 Cma09g01006 Car01g00953 Car09g00918 Sed07g2746 Cpe06g00816 Cpe02g00820 Bhi09g01757 Tan01g3187 Cmetu01g0523 . . Mch11g1264 . . . . . . . . . . . . Lsi02g01838 Csa07g00915 . . . . . . Bpe11g00585 . . Bma14g00685 . Cmo01g01124 Cmo09g01009 . . . . . . . . . . . . . Cla09g02068 Cam09g2157 Cec09g2222 . . . . . . Chy01g01151 Cme01g00920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006979 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37