Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3207 ATGGCTGCCGCCAAGTTCAACAAGAAGAAGGGTGTGAAACGGGACGACCCTCCATCGAAAAGGAAGAAGAAGGATGAGCTCTTCACGCGTAAACGTTCTAAGGAGGAGGAGGAGGATGATTCTGACCTTTCTGATGCTCTGGATGAGGAAGAAGTAGAGAATGGAATGCTTGATGGCGATGAAGAAGGATCTGGGTCTGGTTCTGAAGATTCTTCTGGTGGTGATGATCCCTTGGCTGATGATTTCTTCCCAGGCAGTGACGAAGAGAATGTTTCAGGCTCCGTTTCTGGTTCGGATTCTGATGAATCTGACATCGAAGACAAGTCGAGAGCTATTGATGAAGAAAAGGCGAGGGAGGAAAAAGATGCAGCGGATGAAATGCAGCTCAATATTAGAGAAGAATCCGATGAGTTCAGATTACCAACCAAGGAGGAGCTTGAAGAAGAGGCGCTTAGACCTCCCGACCTTTCAAATTTACAAAGGCGGACAAGAGAAATTGTTCGAGTGCTTTCAAATTTCAAGGCTTTGAGGCAAGAGGGGGCAATCCGGAAGGATTATGTTGAACAACTTAAGAAAGATATTGGTTCATACTATGGCTATAACGAATTTCTTATTGGGGTTCTAGTTGAGATGTTTCCCGTTGTTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCAATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATCTGGCAGATGTTCTGATTAATAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAGTATATGGCTGGTTTTTATATGCTACAAGGTGCAAGCTCCTTTCTTCCTGTGATGGCCCTTGCTCCTCAGGAAAAAGAACGAATCATTGACATGGCGGCAGCACCTGGTGGAAAAACTACTTACATAGCGGCACTCATGAAAAATAGTGGAATAATATTTGCTAATGAGATGAAAGTACCAAGACTGAAGTCACTTACTGCAAATTTACATCGGATGGGAGTGACAAATACTGTTGTCTGTAACTACGATGGGAAGGAGCTCCCGAAAGTATTAGGCATGAATACAGCCGATAGAGTTCTATTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCCGTTAAAACCTCAAAAAGCCTAGAAGAAATCCAGAAATGTGCTCAGTTGCAGAAGCAACTTATACTTGCTGCAATTGACATGGTTGATGCAAATTCAAAAACTGGGGGATATGTTGTCTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAATTGTTGACTTTGCACTAAAGAAGAGGGATGTGAAACTTGTGCCATGTGGCCTTGATTTTGGACGTCCTGGGTTTATGCGGTTCAGAGAAAAACGTTTTCACCCATCTTTAGAGAAGACAAGACGCTTCTACCCCCATGTTCACAACATGGATGGTTTTTTTGTGGCAAAGTTGAAGAAAATGAGCAACAAGATACCAAGTGGTCGATCTTCAGAATCATTGGAAGAGGCAGTGGAAGAAGATAATGAGCCAGAGAAGAGTGCAAATGAGAAGAATGATGGTGAATGTATTGACCCGCAAGTGAACGATGGTAAAAAAAGGAGGAAGATTTCACAAAACAATGACGTTGAAAATGGCGAAGAATCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATCTCAAAAGCTAGGGAAGAAAAACGACAAGCTCTGAGGGAAAAGAAAGCTGGGAGCATGAGCAAGAAAGGGTAA 1836 42.86 MAAAKFNKKKGVKRDDPPSKRKKKDELFTRKRSKEEEEDDSDLSDALDEEEVENGMLDGDEEGSGSGSEDSSGGDDPLADDFFPGSDEENVSGSVSGSDSDESDIEDKSRAIDEEKAREEKDAADEMQLNIREESDEFRLPTKEELEEEALRPPDLSNLQRRTREIVRVLSNFKALRQEGAIRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIIDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDANSKTGGYVVYSTCSIMVDENEAIVDFALKKRDVKLVPCGLDFGRPGFMRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPSGRSSESLEEAVEEDNEPEKSANEKNDGECIDPQVNDGKKRRKISQNNDVENGEESKPTVEKRKKRKFPSREEISKAREEKRQALREKKAGSMSKKG 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86171574 86177583 - Tan0001211.1 Tan01g3207 740631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3207 611 Pfam 16S rRNA methyltransferase RsmB/F 297 507 IPR049560 -
Tan01g3207 611 MobiDBLite consensus disorder prediction 39 58 - -
Tan01g3207 611 NCBIfam NOL1/NOP2/sun family putative RNA methylase 232 508 IPR011023 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0008757(InterPro)
Tan01g3207 611 MobiDBLite consensus disorder prediction 1 125 - -
Tan01g3207 611 MobiDBLite consensus disorder prediction 8 38 - -
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 183 203 IPR023273 GO:0008168(InterPro)
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 239 252 IPR023273 GO:0008168(InterPro)
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 216 228 IPR023273 GO:0008168(InterPro)
Tan01g3207 611 MobiDBLite consensus disorder prediction 532 605 - -
Tan01g3207 611 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 194 508 IPR029063 -
Tan01g3207 611 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 51 512 IPR023267 GO:0000470(PANTHER)|GO:0001510(PANTHER)|GO:0001510(InterPro)|GO:0005730(PANTHER)|GO:0008173(InterPro)|GO:0009383(PANTHER)|GO:0070475(PANTHER)
Tan01g3207 611 Coils Coil 117 137 - -
Tan01g3207 611 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 220 509 IPR001678 GO:0008168(InterPro)
Tan01g3207 611 MobiDBLite consensus disorder prediction 513 611 - -
Tan01g3207 611 MobiDBLite consensus disorder prediction 101 125 - -
Tan01g3207 611 Gene3D Vaccinia Virus protein VP39 296 607 IPR029063 -
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase signature 377 389 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase signature 491 508 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase signature 309 319 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase signature 280 294 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tan01g3207 611 PRINTS RNA (C5-cytosine) methyltransferase signature 431 447 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Tan01g3207 611 Gene3D Sun protein; domain 3 186 293 - -
Tan01g3207 611 FunFam Ribosomal RNA methyltransferase Nop2 187 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3207 K14835 - - csv:101211286 980.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3207 Tan-Chr1:86171574 Tan01g4148 Tan-Chr1:106330010 8.40E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42