Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3212 ATGGTGTGTGGCCAACCGCCATTGCCTCTTTGCTTTAAATATCTGTCTCTGAGGGCCACTCCGCCCGACACCCCCTTCAATCTTGCTAGTGGAGTATCTGGGTTGGTCTTTAATGGGAGCCAACGCCTTTGGCGTTTTTCTAAACCATTTGATTGTCGTTGTGCAATGATTCATTCTGGTTTCTTCCTTTCGGGTCCTACGATTAATTCTGATGCTACTACGTCTTTCATATCAACTCCGGTGTCTAGAGAGGATGGCGATTCGGCTGACGATATCAGAAACGATTCATCTGATTCCCTCCCTCCTTCTTTTTGGGTTAGAACGGCGATGAAAGTCTCTAGAGCTAGATGGTTCATTTTCTTGAGAAGAGTTTTCCACTACCAAAATGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCGGGTCCGTGGATGGCGATGGAACTTGTAGCTCTATTGTTTCAGCTAATCATCTCAGGGTTTACTCTTGCCCTTTCACACACTGAGAGGCCAGTTTGGCCTATGAGAATGTGGATAGGTGGTTATGATCTTGGTTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCACCGGTATTATTATCTAATGCTGGGAGATGATAATAGTCTTTCGGACATCGAACAACAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGTCGGACATCTCTTGATCTTTTCTTTGCAATATGGTTCGTAATGGGCAATCTTTGGGTTTTTGATGCTCGCTTTGCCTCGTTTCAAAGAGCTCCCAAGCTGCATCTACTATGTAGCTTCCTGCTAGTTTGGAATGCCATATGCTACTCTTTCCCATTCATTTTATTTCTGCTGCTATGTTGTTGTGTGCCATTGATTAGTAGTCTCATAGGATATAACATCAATATGGGATCAACCGAAAAAGGAGCATTAGATGATCAAATTTCTCAGCTACCTTGCTGGAAATACAAAGCAGTGGATGCCAACATCAACCTCGGAAGTCAACTCGATAATAGCAGTACAGGACTTCCCAAAGAGGATCCAGAATGTTGTATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCTCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTATAAGGAAAGGTCGTTTTCAATGATCAGTTCTGGTTATTTCGTTTCGGGGCCCTTGTGTAACTGCGGTGGCACTGCTTCCTTTATCTCAAATTCATTGATGGAAGAAGATGGTGCCGGTGCCGATGTTAGAGATGGCCATTCTGTTGCTCTCCCTGCTGCATCTTTCTGGGTTAGGACGGCGATGAGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGAGTATTTCACTACCAGAATGGATCAAGATCGGATCTCGGGTCTGATCCTTTCAATTCTAGCTCATGGATGGCAATGGAGCTGGTAGCTATGGTGTTTCAGTTGGCCATCACAGTGTTCTTTCTTGCCATTTCAGAGACTGAGAAGCCAGTGTGGCCGATGAGACTGTGGATAGTTGGTTATGATCTTGGCTGCGTTCTTAGTTTGTTGCTTCTCTACGGGCGCTATTGGCATCTGTATTTAATGCGCGGAGACCGTGTCAGTCTTTCTGATACTGAGCAGCGAAGGAGCAGTCAATCAAGGAGCTTGCGTTTGATGAACAAATGTCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTGATGGGTAATGTTTGGATCGTCGACTCTCGCTTTGGTTCTTTCCAAAGAGCTCCTAAGCTTCATCTGTTATGTGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTGCTGCTATGTTGTTGTGTGCCATTGATTAGTAACCTTCTAGGATATAACATTAACATGGCATTGACCAACAAAGGAGCATCTGATGATCAAATTTCCCAGCTACCCTGCTGGAGATATAAAACAAGTTCAAAGCAACCTGATAGTAGTAACAATGGACTTCCAACAGAGGATCCAGAATGTTGCATTTGCCTTATCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTGCCTTGTTCTCATTTGTTCCATCTCAAGTGTAATGGTTATCGTCATGGTCGTGCTTGTCCAAGGTGTTTTGTAATTGTCTAG 2205 43.58 MVCGQPPLPLCFKYLSLRATPPDTPFNLASGVSGLVFNGSQRLWRFSKPFDCRCAMIHSGFFLSGPTINSDATTSFISTPVSREDGDSADDIRNDSSDSLPPSFWVRTAMKVSRARWFIFLRRVFHYQNGSRSDLGPNPFNSGPWMAMELVALLFQLIISGFTLALSHTERPVWPMRMWIGGYDLGCVLSLLLLYGRHRYYYLMLGDDNSLSDIEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWVFDARFASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINLGSQLDNSSTGLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLYKERSFSMISSGYFVSGPLCNCGGTASFISNSLMEEDGAGADVRDGHSVALPAASFWVRTAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCVLSLLLLYGRYWHLYLMRGDRVSLSDTEQRRSSQSRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFGSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISNLLGYNINMALTNKGASDDQISQLPCWRYKTSSKQPDSSNNGLPTEDPECCICLIKYRDEEEVRQLPCSHLFHLKCNGYRHGRACPRCFVIV 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86364109 86383404 + Tan0005123.1 Tan01g3212 740636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3212 734 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 78 396 - -
Tan01g3212 734 Pfam RING-like zinc finger 691 718 IPR001841 -
Tan01g3212 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 732 IPR013083 -
Tan01g3212 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 398 IPR013083 -
Tan01g3212 734 Pfam Ring finger domain 353 393 IPR001841 -
Tan01g3212 734 ProSiteProfiles Zinc finger RING-type profile. 692 730 IPR001841 -
Tan01g3212 734 SUPERFAMILY RING/U-box 685 732 - -
Tan01g3212 734 ProSiteProfiles Zinc finger RING-type profile. 354 395 IPR001841 -
Tan01g3212 734 SMART ring_2 692 730 IPR001841 -
Tan01g3212 734 SMART ring_2 354 394 IPR001841 -
Tan01g3212 734 SUPERFAMILY RING/U-box 349 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3212 Tan-Chr1:86364109 Tan02g2670 Tan-Chr2:95009816 3.20E-45 dispersed
Tan01g3212 Tan-Chr1:86364109 Tan11g0509 Tan-Chr11:4319653 1.70E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3212 - - - 0.0