Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3218 ATGACTCTCAATCATTATGCCCTTTATGGTATCATCAAAGCATTTTGGAGATTTCGACAGGGAAAATTTTTCATCGGTAACCAGGCACAAAATCCCTTGCTGTTACTTGAGCAATATAGTGATGATGAAGTTGATGAGGACTTGAATAAAAATTCAGATAATGATGGGCAAGATGGTTTGTTACCCGACTGCAATGATGAGGTTGCTGCGGTTCCTACTGAGGGATGTGAGAAAATTGATGCAAATGTCAGTGAAGACCTCATTGCTCAAAAGGCTGTTCAAGAGGAATCAGAGCGAGGTTCTGTTGAATTTTCTGAGAACCTAGAAAGCAAAGATGAAGCAAAAACTGAAACTAATAACTTGGGATATTTGAGCAAGGAAACTGATTTGGTTCAAACATCTGTACCAGCCACATCTAATGTCCAAGTCTCAGGGGATGTTATTTCAGGATGGAGGATTGTTATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTAGAAACTGGGGAAACTTCGTGGGAAGTACCTGATGTTGTTTTGGCTCACGCTCAGCCTACTCAATCAACCACTGATATTAAAACTTCTCCTAGTCAATTTCCAGAGAACGTTACAGTCCTTAAACAAGAATCTGGCTTAACTAATGGTGGGAAGTTAGATGCTTTTTCAGCAGAAAGCACAGGTTACAAGAATGGTGCTCCAGTATGTGCAAGTCAGGGTTCTGAGATTGATCAAAGCTATGCAGCCTTCAGTACTTGTTCAAATGATGTGAACATAACAAAAGCCGGTTCTGAGATCTATATTGATTACACAGTGACTCATGAAGAACTGAAATCAGGGTTGGATCTTCCCTCACATCTTCTGAACTGGAGTGCAAGCTTGTTAGAGAGATTGAAATCATTACAAAAGTCTGGAGGTCATGAATGGACATCAAATTACGTAGTGGAAACTCAGATTAGACTTTCAGATTTGAAGTCACTGATGCCCTATAAGACATCTTTGCTTCCATTCTGGGAACACTCAGCAAGGAAGCTTAAACAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGCTGTATCATCGCAATTGGATGAAGCCAAGGCTACTGATAGTCCAAACATTGTAAGAGAGGAGAAATTTCAGGAAAGGTCGAATGTTGAGTCTGAAGTAGAGAGAGTGTCAAATAGTGTTTCTGCTTTGGAGCATTCTCATTTGCCAACTGATTCTGCTTCTTTGACACTCCAAGGAGATCAAAGCCAAGTAACTGCCATTGCAAATGTCGAAACTATTTCATCAACTAAAGCAATTGAACACATGGGAAACTCTACTGCTGTGACTGAGCATGCAAGTGAAGTTGCAATTGACGAAATGGCTTCCAAGAGTGGTGTACATTCTGTGGAAGATGTTGACATGGAGGTGGATATGGAAGTTGAAGATGCCAGTTCTGCAGGTAACTTGACGGTGATTGGCATGTCATATATGTCCATTCCTAAGTCGTTTACTTCCTTGGAGCAATCACTTCAGCCAGATCCACAAGCCCGGCCAAATCTTTCTTCTGAATATGCATCCATGGTGCCAGAGGATAGCTCTGTAGCACCACCGCCACCACCACCAGATGAGGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCTGATGAGCCAGCTGAACCATTATATCCTATGCCTCCATCTTATACCCAAGTTGGGCAGCCTCTTTGTTACACTGAACCTTATCAAGTGTCTTATCCCGATTCTATTAAGTATTATGCACATCCTGTCCCCGAAGTCGTCCCTAGTGCAAACTTTTACGGACATCCTGAAGCATGTAACGTTGTTTTGGCTCAAGCACCATTTTACTATGAGGCAGTTCCCAATTCACATACTGATTCTGCTCCCATGCTTGTAAATGGTGTTGTGCCTGAAGGCTATGGTATTCTTCAAGATGCAACAACCTCTCTTCCCGTCTTTAGTACTGCAGAGTCTTCTCAGTTGCATGTTGATTCCTCATCTGCGAGACTTGATCCTTCTTCCTCTTTTCAATATGGATCTTCGGACATAGCAAATATGAATGCTGCTTCTGCCACTGATGAAATTGACAAGGGACGTGGAGAGACCACAACAGCCTCCTTCCGAGCATCTACTTCGGGCTCCCCAACTAATGATGTTCTGCCTACAAGTAATGCTGTTACTGATTCTTCAGCTGTTGCTAATACATCTGCAGTTTCCAAGGTTCAACCAAAAGCTCTGCGCAGTAAAAAACGAACAGTTACAGTTGCTCCCTCCTTGAGATCGAATAAGAAAGTTTCGAGTTTGTTGGACAAGTGGAAGGCAGCGAAGGAAGAACTTGAAGATGAGGAAGAACCAGAAAATGCTTATGAGATTCTAGAGAGGAAACGAGAAAGAGAAATAAAGGAATGGCATGCACAGCAGATTGCCAGTGGGGATGCCAAAGAAAACGCTAACTTTCAGCCCCTTGGCGGAGATTGGCGCGAGCGGGTAAAGAGAAGGAGAGCTCAATCATCAAGTGAAGCAACTCAATCCCCTGCGGAAGCATCCGCAGATGGAAACCAGCAGCCTGACCTGGCAGAAATCTCAAAAGATCTCCCATCAGGGTGGCAGGCATATTGGGACGAGTCTTCGAAGCAGGTGTATTATGGTAATGTTAACACCTCGGAAACGTCGTGGACAAAACCGAGCAAGTGA 2733 43.18 MTLNHYALYGIIKAFWRFRQGKFFIGNQAQNPLLLLEQYSDDEVDEDLNKNSDNDGQDGLLPDCNDEVAAVPTEGCEKIDANVSEDLIAQKAVQEESERGSVEFSENLESKDEAKTETNNLGYLSKETDLVQTSVPATSNVQVSGDVISGWRIVMHEESHNYYYWNVETGETSWEVPDVVLAHAQPTQSTTDIKTSPSQFPENVTVLKQESGLTNGGKLDAFSAESTGYKNGAPVCASQGSEIDQSYAAFSTCSNDVNITKAGSEIYIDYTVTHEELKSGLDLPSHLLNWSASLLERLKSLQKSGGHEWTSNYVVETQIRLSDLKSLMPYKTSLLPFWEHSARKLKQIEDDINKEIYQTAAVSSQLDEAKATDSPNIVREEKFQERSNVESEVERVSNSVSALEHSHLPTDSASLTLQGDQSQVTAIANVETISSTKAIEHMGNSTAVTEHASEVAIDEMASKSGVHSVEDVDMEVDMEVEDASSAGNLTVIGMSYMSIPKSFTSLEQSLQPDPQARPNLSSEYASMVPEDSSVAPPPPPPDEEWIPPPPPDNEDVPPPPPDEPAEPLYPMPPSYTQVGQPLCYTEPYQVSYPDSIKYYAHPVPEVVPSANFYGHPEACNVVLAQAPFYYEAVPNSHTDSAPMLVNGVVPEGYGILQDATTSLPVFSTAESSQLHVDSSSARLDPSSSFQYGSSDIANMNAASATDEIDKGRGETTTASFRASTSGSPTNDVLPTSNAVTDSSAVANTSAVSKVQPKALRSKKRTVTVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGGDWRERVKRRRAQSSSEATQSPAEASADGNQQPDLAEISKDLPSGWQAYWDESSKQVYYGNVNTSETSWTKPSK 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86458400 86466535 - Tan0015593.2 Tan01g3218 740642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3218 910 MobiDBLite consensus disorder prediction 705 737 - -
Tan01g3218 910 PANTHER OS06G0298400 PROTEIN 26 910 - -
Tan01g3218 910 Coils Coil 775 795 - -
Tan01g3218 910 MobiDBLite consensus disorder prediction 818 876 - -
Tan01g3218 910 SUPERFAMILY WW domain 138 177 IPR036020 GO:0005515(InterPro)
Tan01g3218 910 CDD WW 879 908 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 ProSitePatterns WW/rsp5/WWP domain signature. 882 908 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 MobiDBLite consensus disorder prediction 525 572 - -
Tan01g3218 910 MobiDBLite consensus disorder prediction 532 571 - -
Tan01g3218 910 Gene3D - 872 910 - -
Tan01g3218 910 MobiDBLite consensus disorder prediction 850 864 - -
Tan01g3218 910 ProSitePatterns WW/rsp5/WWP domain signature. 151 177 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 SMART ww_5 877 910 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 SMART ww_5 146 179 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 MobiDBLite consensus disorder prediction 94 116 - -
Tan01g3218 910 ProSiteProfiles WW/rsp5/WWP domain profile. 876 910 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 MobiDBLite consensus disorder prediction 94 121 - -
Tan01g3218 910 Pfam WW domain 878 908 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 Pfam WW domain 149 177 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 CDD WW 149 178 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 Gene3D - 146 186 - -
Tan01g3218 910 SUPERFAMILY WW domain 875 908 IPR036020 GO:0005515(InterPro)
Tan01g3218 910 ProSiteProfiles WW/rsp5/WWP domain profile. 145 179 IPR001202 GO:0005515(InterPro)
Tan01g3218 910 MobiDBLite consensus disorder prediction 716 737 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3218 K24774 - - csv:101219916 1347.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3218 Tan-Chr1:86458400 Tan01g3220 Tan-Chr1:86458400 0.00E+00 dispersed
Tan01g3217 Tan-Chr1:86458400 Tan01g3218 Tan-Chr1:86458400 0.00E+00 tandem
Tan01g3218 Tan-Chr1:86458400 Tan01g3219 Tan-Chr1:86458400 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42