Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3231 ATGTTTTCAGGAAGAACAATGTCTGCAATTCTAAGCAATCCCTTTCTTCCTCCTCATTTCTTCTTCACCATAGCCTTGGTTTTATCTGTAAACTCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAACAGGGTCGAGTTCTTCTAACATGGAAGGATAATCTAACAAGCTCTACAGATGCTTTGAGTTCATGGAATCCTGAGACCCGATCACCATGTTCATGGTTTGGAGTTTTCTGTGACCAGAATGGAGTGGTGGTGGAGATAGCCCTGAATTCAGTGGATTTGCAAGGAACATTGCCTACAAATCTTCAGGCTCTCAAGTTCTTGAGGGGCCTTGTCATCACTGGGACGAATATTACCGGAACGATTCCGAAAGAGTTTGGAGATTATAATGAGCTCAGAGTTCTTGATCTTAGCAACAATAGCCTCTCGGGGAATATCCCAGAAGAGATTTGCAGGCTGAGTAAGCTGGAGGATTTGGCTCTTAATGCCAATGATTTTGATGGGATCATACCTTTGGAGATTGGAAATCTGACAAACCTTGTGTACCTCAAAATTTCTGATAATAATCTCAATGGGGGGATTCCAAAGAGCATTGGAATGTTGAAGAACCTTTATCATCTCAAAGCTGGAGGGAATGCAAATCTCAAGGATGAGTTGCCAATGGAGATTGGAAACTGCAGCAATTTAGCATTGTTAGGCTTAGCCGAAACTGGAATCTCCGGTCGTCTTCCTTCAACAATTGGGATGCTGAAAAAACTCCAGACCATAGCCATGTATAATACAAAACTTCAAGGTCCAATCCCAGAAGAGATTGGAAACTGTACTGAGTTGCAGACTCTTTACCTGTATAAGAATATGCATTCTGGGCCAATACCGAGAGGACTCGGGAACCTGAGAAACCTTCAAAGACTTATTCTATGGATGAACGCCTTGGAGGGCAGCATTCCAGAAGAAATTGGAAATTGCAAGGAACTCGTAGTCCTAGACATTTCAGAAAATTCGCTAACTGGAAGCATACCAAAAAGTCTTGGAGGGCTTCCACGTCTTCAAGAGATTCAACTCAGTATTAATCAGATATCTGGTGCAATACCTTCTGAAATCTCTAATTGTTTGTCTTTGGTTCACATGGAAATAGACAACAACAATATTTCAGGCGAGATTCCGGCTGATATGGGCAACCTGAAGAACTTGAATCTATTTTACGCCTGGCAGAACCGACTTACAGGAAGTATTCCCAGCACTTTCTCAGGCTGCGAGCATCTCCAGGCTCTTGATCTCTCTTATAATCACTTGTCTGGTCAAATACCGAAAGATATTTTCGGGTTGAAAAATCTCACCAAACTTATTCTGATGTCAAATAACCTGTCCGGGATCATTCCACCTGAGATAGGAAATTCTACGAAACTATACAGGTTAAGACTGTCTGATAATAGGATTGGAGGTACTATTCCATCAGAGATTGGAAATCTGAAGAACTTAAATTTTTTTGATGCGAGTGGAAACCTTCTTGTTGGAGGAATTCCTCCATCATTATCGAAATGTGAAAATCTTCAGTTTTTCGACCTCCATTCAAATGGGCTCACTATTCCTCTTCCAAATGATCTGCCAAAGAGCCTACAGTTTTTTGATGTATCCAACAACAGGCTTAAAGGCCATGTCAATCCCAGCATTGGAGGATTGATGGAGCTAACAAAACTCAACCTCAGACACAACCATCTTTCAGGGAATATCCCTGGAGAAATTGTTTCTTGCAAGAAGCTCCAGTTTTTAGACCTTGGCAGCAATCGCTTCTCTGGAGAACTCCCAAAGGAATTGGGTCTAATTTATTCACTTGAAATTGCTCTCAATCTAAGTTGCAATCAATTTTCAGGTGAAATCCCATTCGAATTCTCTGGTCTCACCAAGCTGGGAATTCTAGACCTCTCCCACAACAACCTCTCTGGGGACCTTAGATTTCTTGCAGAGCTTGAAAACCTTGTGTCGCTAAACGTCTCCTACAACAACTTCTCTGGCAAGTTGCCGGACACACCATACTTTCGAAAGCTCCCTCTAAGGGACATTGCTGGAAACGAAGGCCTCCATGTTTCACATGGGCTAGTAACTCCTACAGACAATGTGGTATCCCACAACAGAAGCAAACAAGCAATAAAGGTAGGCATCCCAATCCTGATCAGCATAAGTGCCGTGCTGTTCTTTCTAGCAATCTACATGCTACTCCGCACCCACATGGCCAATTCCATCCTTCACATAGAAGGCGAAAAATGGGAAATAACCTTGTTTCAAAAGCTCGACTTCTCAATCGATAACATCCTCCAAAACTTAACTGCATCCAATGTGATCGGCACTGGAAGCTCTGGTGTCGTCTACAGAGTCCCAACGCCAAATGGGGAAACAATGGCAGTGAAGAAAATATGGTCCACTGAAGAGACCGGAGCCTTCAGCGCTGAAATCCAAACTTTAGGATCAATTCGACACAAGAACATAATCAGGCTACTGGGTTGGGGATCCAACAAGAATTCAAAGCTCCTGTTTTATGATTATCTTCCAAATGGAAGCTTGAGCTCCCTTATTCATGGCCCGAGTAAAGGAGAAGCAGAATGGGAGGCCAGATACGAAGTCCTTCTAGGAGTAGCTCATGCACTTGCATATCTCCACCATGATTGTGTACCACCAATCTCACATGGCGATGTCAAACCCATGAACGTCCTGCTCGGCCAAGACTTTGAACCATACCTCGCCGACTTTGGGCTCTCCAGAATCGTGAGTAAAAACGGCGATGATGATGGTTTAGGGAAGTCATTGCTGAGACCTAATCTTGCTGGCTCTTTCGGCTACATGGCCCCTGAACAAGGATCGATGCTTAAAGTCACAGAGAAGAGCGATGTGTACAGCTTCGGTGTAGTGATAATGGAGGTTCTAACAGGGCGGCACCCACTGGACCCGACTTTACCAGGAGAATCTAATTTGGTGCAATGGGTTCAAGACCATTTGGCCGCAAAGCGAAACCCAGTCGCCATTTTCGATTCGAATCTGAGAGGAAGAACTTATCCCGCAATGCAGGAAATGGTTCAAACCCTAGCAGTCGCATTGATCTGTGTCAACGACAAGGCCGATGATCGACCCCCAATGAAAGATGTCGTCGCGATGCTCGAGGAGATTGAACAAGTCGAATCGAGAAAAGCCGCCGTCGACGGCCCCAAGCCGGGATTGGCGGTGGTGGTTCAGTCGCTGCCGCCGCGGAACAAGTTTCTATCCCAGGGATCTTCTCAGTGCTCCCTTGGCTTCTCTGATGATTCAATCTGA 3309 44.42 MFSGRTMSAILSNPFLPPHFFFTIALVLSVNSLLFSSCYSIDEQGRVLLTWKDNLTSSTDALSSWNPETRSPCSWFGVFCDQNGVVVEIALNSVDLQGTLPTNLQALKFLRGLVITGTNITGTIPKEFGDYNELRVLDLSNNSLSGNIPEEICRLSKLEDLALNANDFDGIIPLEIGNLTNLVYLKISDNNLNGGIPKSIGMLKNLYHLKAGGNANLKDELPMEIGNCSNLALLGLAETGISGRLPSTIGMLKKLQTIAMYNTKLQGPIPEEIGNCTELQTLYLYKNMHSGPIPRGLGNLRNLQRLILWMNALEGSIPEEIGNCKELVVLDISENSLTGSIPKSLGGLPRLQEIQLSINQISGAIPSEISNCLSLVHMEIDNNNISGEIPADMGNLKNLNLFYAWQNRLTGSIPSTFSGCEHLQALDLSYNHLSGQIPKDIFGLKNLTKLILMSNNLSGIIPPEIGNSTKLYRLRLSDNRIGGTIPSEIGNLKNLNFFDASGNLLVGGIPPSLSKCENLQFFDLHSNGLTIPLPNDLPKSLQFFDVSNNRLKGHVNPSIGGLMELTKLNLRHNHLSGNIPGEIVSCKKLQFLDLGSNRFSGELPKELGLIYSLEIALNLSCNQFSGEIPFEFSGLTKLGILDLSHNNLSGDLRFLAELENLVSLNVSYNNFSGKLPDTPYFRKLPLRDIAGNEGLHVSHGLVTPTDNVVSHNRSKQAIKVGIPILISISAVLFFLAIYMLLRTHMANSILHIEGEKWEITLFQKLDFSIDNILQNLTASNVIGTGSSGVVYRVPTPNGETMAVKKIWSTEETGAFSAEIQTLGSIRHKNIIRLLGWGSNKNSKLLFYDYLPNGSLSSLIHGPSKGEAEWEARYEVLLGVAHALAYLHHDCVPPISHGDVKPMNVLLGQDFEPYLADFGLSRIVSKNGDDDGLGKSLLRPNLAGSFGYMAPEQGSMLKVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGESNLVQWVQDHLAAKRNPVAIFDSNLRGRTYPAMQEMVQTLAVALICVNDKADDRPPMKDVVAMLEEIEQVESRKAAVDGPKPGLAVVVQSLPPRNKFLSQGSSQCSLGFSDDSI 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86571938 86575594 + Tan0017126.1 Tan01g3231 740655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3231 1102 Gene3D Ribonuclease Inhibitor 297 376 IPR032675 -
Tan01g3231 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 850 1069 - -
Tan01g3231 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3231 1102 Gene3D Ribonuclease Inhibitor 196 296 IPR032675 -
Tan01g3231 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 215 438 - -
Tan01g3231 1102 SMART serkin_6 776 1025 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3231 1102 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 PRINTS Leucine-rich repeat signature 134 147 - -
Tan01g3231 1102 PRINTS Leucine-rich repeat signature 635 648 - -
Tan01g3231 1102 SUPERFAMILY RNI-like 293 665 - -
Tan01g3231 1102 Gene3D Ribonuclease Inhibitor 377 615 IPR032675 -
Tan01g3231 1102 FunFam Putative LRR receptor-like serine/threonine-protein kinase 616 700 - -
Tan01g3231 1102 Pfam Leucine Rich Repeat 374 396 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine Rich Repeat 181 202 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine Rich Repeat 471 492 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine Rich Repeat 565 585 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine Rich Repeat 617 635 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine Rich Repeat 660 678 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine Rich Repeat 588 608 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 439 533 - -
Tan01g3231 1102 FunFam Nuclear pore complex protein NUP107 41 198 - -
Tan01g3231 1102 Gene3D Phosphorylase Kinase; domain 1 753 849 - -
Tan01g3231 1102 SMART LRR_typ_2 300 324 IPR003591 -
Tan01g3231 1102 SMART LRR_typ_2 562 586 IPR003591 -
Tan01g3231 1102 SMART LRR_typ_2 133 155 IPR003591 -
Tan01g3231 1102 SMART LRR_typ_2 420 444 IPR003591 -
Tan01g3231 1102 SMART LRR_typ_2 179 203 IPR003591 -
Tan01g3231 1102 SMART LRR_typ_2 348 372 IPR003591 -
Tan01g3231 1102 SMART LRR_typ_2 635 661 IPR003591 -
Tan01g3231 1102 SUPERFAMILY L domain-like 65 399 - -
Tan01g3231 1102 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524(InterPro)
Tan01g3231 1102 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 535 615 - -
Tan01g3231 1102 Pfam Protein kinase domain 779 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3231 1102 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Tan01g3231 1102 ProSiteProfiles Leucine-rich repeat profile. 133 155 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Gene3D Ribonuclease Inhibitor 41 195 IPR032675 -
Tan01g3231 1102 Gene3D Ribonuclease Inhibitor 616 700 IPR032675 -
Tan01g3231 1102 ProSiteProfiles Protein kinase domain profile. 776 1055 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3231 1102 SUPERFAMILY Protein kinase-like (PK-like) 768 1054 IPR011009 -
Tan01g3231 1102 Gene3D Transferase(Phosphotransferase) domain 1 850 1068 - -
Tan01g3231 1102 Pfam Leucine rich repeat 110 168 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine rich repeat 397 457 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 Pfam Leucine rich repeat 301 361 IPR001611 GO:0005515(InterPro)
Tan01g3231 1102 PANTHER LEUCINE RICH REPEAT KINASE 2 371 1055 IPR051420 -
Tan01g3231 1102 FunFam Putative LRR receptor-like serine/threonine-protein kinase 761 849 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3231 Tan-Chr1:86571938 Tan06g2327 Tan-Chr6:74635291 9.90E-99 dispersed
Tan01g3231 Tan-Chr1:86571938 Tan09g2281 Tan-Chr9:72768891 1.70E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67076 PF00069 Pkinase 7.40E-37 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3231 - - - 0.0