Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3238 ATGTTCATCATCGGCCGGCAACACCCTTCCGGACCGCCGGAAGTCTTCGGCGAAAAGTGGCTCAAGTATTACTGCTCCAACCACGAAATACTTTTGGTCGGCGAGGGAGATTTTTCCTTCTCTCTCAGTTTGGCCATTTCTTTTGGTTCTGCTTCCAACATCGTCGCCACTTCGCTCGACTCTTATCACGAGGTGGTGACGAAGTACAAGAACGCGAGGTTTAATTTAAGGATTCTGAGGGATTACGGTGCTTCTGTATTACATGGAGTCGATGCGACTAAAATGAAGCGTCATGTCGACTTGCATATGAGGAAATTTGATAGGATCATCTTCAATTTTCCTCACGCTGGTTTCTTTGGGAGGGAGGACAATCTCTTAATGATTCGGATGCATAAGAGACTTGTGTATGAGTTTTTCAAGAATGCAAGCCAAATGCTGCGAGTTGATGGTGAAATCCATGTGAATCACAAAACAAAAGCCCCCTTTTGTTATTGGAATATTATCCAACTCGCCCATCAAAACTCCCTGCAACTGATTGGATGTGCTAATTTCATTATACAGGACTACCCTGGATATAAAAACAAGAGAGGGCAAGGTAATAGATGTGATCACCCTTTCTTTTTGGGTGAGTGCTCTACTTACAAATTTAGTATTAACCATAGAGCCAATAGGACACCAGGAGTATTGCACATGAATGCCATAGATATGCAAAGAAATCTGCCATTTCAGGACATCCCAATCTCAAATCACTGCCATCATCCATATCCAACTTCATTTGAACCAAATGTCTTGCTTAGTAGATTCATGGCAGGAATGCCCGAGATGATGTCGAATGACAACGTTCATTGGTCGAGCATTTCTAGGTCTAATTATGGTGAGGAGACTGAGAGATCAGATTTTTTGAAAGCACATCTGCCAAATACATATTTACTAAATTCACAACCAAATAGACCCTTCAAAACTCAAATTTTAGGCAAAAATTCGAATGGGTTTAAAACAAGACCTTTAGATAACTCAATCTCAAAGACCCCAAAACCAATTTTGAAAACAAACTCAAGGAAAAATGATGAACCTTTGAAACTTTTATCTAAGGGTAGAAAAATTAAGAACAAGATATGTAACTCTCACAAATTAAGAACAATTGCTGGAATTTTAAATACAAGAGTTGTTATTTAA 1176 39.54 MFIIGRQHPSGPPEVFGEKWLKYYCSNHEILLVGEGDFSFSLSLAISFGSASNIVATSLDSYHEVVTKYKNARFNLRILRDYGASVLHGVDATKMKRHVDLHMRKFDRIIFNFPHAGFFGREDNLLMIRMHKRLVYEFFKNASQMLRVDGEIHVNHKTKAPFCYWNIIQLAHQNSLQLIGCANFIIQDYPGYKNKRGQGNRCDHPFFLGECSTYKFSINHRANRTPGVLHMNAIDMQRNLPFQDIPISNHCHHPYPTSFEPNVLLSRFMAGMPEMMSNDNVHWSSISRSNYGEETERSDFLKAHLPNTYLLNSQPNRPFKTQILGKNSNGFKTRPLDNSISKTPKPILKTNSRKNDEPLKLLSKGRKIKNKICNSHKLRTIAGILNTRVVI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86953570 86960956 - Tan0016744.1 Tan01g3238 740662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3238 391 PANTHER PHENYLALANYL-TRNA SYNTHETASE 23 192 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Tan01g3238 391 MobiDBLite consensus disorder prediction 328 348 - -
Tan01g3238 391 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 31 196 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
Tan01g3238 391 FunFam Os09g0479300 protein 28 179 - -
Tan01g3238 391 MobiDBLite consensus disorder prediction 328 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3238 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3238 Tan-Chr1:86953570 Tan03g2198 Tan-Chr3:76509602 1.40E-52 dispersed
Tan01g3238 Tan-Chr1:86953570 Tan01g3239 Tan-Chr1:87007014 7.10E-52 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g765 . . . . . . . . . . . . . . Sed07g2769 . . Bhi09g01829 Tan01g3238 Cmetu01g0398 . . Mch11g1316 . . . . . . . . . . . . . . . . . . . . . . Bma07g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013837 0 3 0 0 0 1 0 1 1 0 1 1 0 1 1 0 1 0 0 1 1 1 0 1 1 1 1 1 1 3 23