Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3239 ATGGATGAGAAGACGATAGAGCATTACAGCAGCTCCCACAGAATACTCCTCGTCGGAGAAGGCGACTTCTCCTTCTCGGCCTCCTTGGCCACAGCCTTCGGCTCCGCTTCTAATATGGTTGCCACTTCTCTCAACTCTAAAGAGTGGCTGCTGAGAACGTATTCGCAAGTTGAGACAAACTTGAAAAATTTGGAGGAACTCGGCTGCACATTGGTGCATGAAGTCGATGCAACGACGATGATCAAACACCCACTTCTCCGCCACAACTTATTCGATCGCATCGTCTACAACTTTCCACATGCAGGTTTTCACTTTAAAGAATTTGACCCTAGACAAATCGAACTCCACCGGAATCTTGTTCGAGGGTTTTTGAGGAATTCAAAGGAAATGATGGATGAAAATGGTGAAATTCACATCACCCACAAGACTTCACATCCTTTCAGCAAATGGGAAGTTGTGGAATTGGCACAAGAAGTGGGTTTGTTTCTAAAGGAAGAAGCTGATTTCAGTAAATGGGATTATCCAAATTATGAGAATAAGAGAGGAGATGGATGGAATACCGATGGCACTTTCCCTGTTGGAGCATGCAGCACTTTCAAGTTTTCAATCAATTAA 615 44.07 MDEKTIEHYSSSHRILLVGEGDFSFSASLATAFGSASNMVATSLNSKEWLLRTYSQVETNLKNLEELGCTLVHEVDATTMIKHPLLRHNLFDRIVYNFPHAGFHFKEFDPRQIELHRNLVRGFLRNSKEMMDENGEIHITHKTSHPFSKWEVVELAQEVGLFLKEEADFSKWDYPNYENKRGDGWNTDGTFPVGACSTFKFSIN 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87007014 87009156 - Tan0005047.1 Tan01g3239 740663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3239 204 PANTHER PHENYLALANYL-TRNA SYNTHETASE 7 193 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Tan01g3239 204 Coils Coil 47 67 - -
Tan01g3239 204 FunFam Os09g0479300 protein 13 164 - -
Tan01g3239 204 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 16 181 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
Tan01g3239 204 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 58 160 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3239 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3239 Tan-Chr1:87007014 Tan03g2198 Tan-Chr3:76509602 8.00E-55 dispersed
Tan01g3238 Tan-Chr1:86953570 Tan01g3239 Tan-Chr1:87007014 7.10E-52 tandem
Tan01g3239 Tan-Chr1:87007014 Tan01g3240 Tan-Chr1:87029542 6.00E-42 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g766 . . . . . . . . . . . . . . Sed07g2770 . . Bhi09g01830 Tan01g3239 Cmetu01g2171 . . Mch11g1317 . . . . . . . . . . . . . Csa07g01054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000968 3 1 1 2 2 2 2 2 2 3 1 2 2 3 3 3 2 3 3 2 3 4 3 5 7 3 4 3 4 0 80