Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3241 ATGTTGGTAGCAGAGGCAAAGGCAGTGGCCAAGCAAGCAGAGAAGGAGAAATTGCCTTCTCCAACAAGGAGTATTTTGTGGGAACTGCTACTCGTCTTACAGCGTTCAACTCTTAAAGACTCGTCTTACAACGTTCAACACTCAACACTAAGGACTTTAGGGAGCATTCAACAATTAAGACTTTGCTCTAAATTATCTCTAAGTTCTCTTGAGAGTCGAAATTCTGAACCTTTGGAATGGAGGGGAAGCTCTCTATTTATAGATCTTTCGTCTTGGGAATTCGCCAACCTGGGAAAGTCCGGAGAGCACTTCCTCGACGGTATCTTCGGTTGCATCCATGAAATCACAGCAGCCCTCGCGTTCGCTAGGATGAGTGACTCAGCATACAGAGTAGAAACCACATCCCGTCTCGCGCAATGGAGGATCGAAAATCTAGCTTCCTGCACATACCGCAAATCCGATCCTTTCAAAATTGGCAAGTGGAACTGGCATTTATCAGTGGAAAAAAACAGGCTTTTATATGTTAAATTATACCCAGAGATTTCGAGCTTAACAAGGGACAATCCCCCGATTGTATCTTTCATCATCCGAGTGATCTCCTCTGCAGGAGATCGGAAGGCTTTGACTCATCCAGAAATAATAGACAAACAGCTTAAAAACAACGACGATTTTATTTGGCCAATTGAAGTTCCATTAATAGGAAAGTTCATCATTGACGTCGAATTCCTTGACTTGAAGATTGCATCACCCGAGGGTGGGGAACCTTCCTCCATCTGGGTTGATGGATTGACACAACAACGATCGAATGCAAGAGCTCTTATTTCATTGGGTCGAATGTTGAAGGAAAGCATCCACACGGATATCATAATTAATGCTTCTGATGGAAGTGTTGGAGCCCATCGTGCTATTCTTGCTTCACGATCACCTGTATTCCACAGCATGTTTTCACATGACCTGAAAGAAAAGGAACTATCTACGCTAAATATCTCTGATATGTCTTTTGAAGCTTGCCAGGCTTTGCTCAACTATATGTATGGTAATATCCAACATGAAGAGTTTCTCACCCATAGACTGGCACTTCTTCATGCAGCTGATAAATATGACATAGATGATCTAAAAGAAGCCTGCCATGATAGTCTGCTAGAAGATATTGATGCCAAGAATGTTCTTGAAAGACTCCAAAATGCATCTCTTTATCAATTGCCAAAACTGAAGACCAGCTGCATGCAGTATCTTGTGAAGTTTGGTAAGATATTCGACATCCGAGATGAATTCAATGTCTTTCTGCAAAATGCAGATAGGGATCTAATAGCTGAGATCTTCCATGAAGTTCTTAATGCTTGGAAAGGATTCTAA 1356 41.89 MLVAEAKAVAKQAEKEKLPSPTRSILWELLLVLQRSTLKDSSYNVQHSTLRTLGSIQQLRLCSKLSLSSLESRNSEPLEWRGSSLFIDLSSWEFANLGKSGEHFLDGIFGCIHEITAALAFARMSDSAYRVETTSRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRLLYVKLYPEISSLTRDNPPIVSFIIRVISSAGDRKALTHPEIIDKQLKNNDDFIWPIEVPLIGKFIIDVEFLDLKIASPEGGEPSSIWVDGLTQQRSNARALISLGRMLKESIHTDIIINASDGSVGAHRAILASRSPVFHSMFSHDLKEKELSTLNISDMSFEACQALLNYMYGNIQHEEFLTHRLALLHAADKYDIDDLKEACHDSLLEDIDAKNVLERLQNASLYQLPKLKTSCMQYLVKFGKIFDIRDEFNVFLQNADRDLIAEIFHEVLNAWKGF 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87030373 87042945 + Tan0010753.1 Tan01g3241 740665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3241 451 PANTHER OS08G0495500 PROTEIN-RELATED 127 450 IPR044714 -
Tan01g3241 451 Gene3D Potassium Channel Kv1.1; Chain A 264 414 IPR011333 -
Tan01g3241 451 Pfam BTB/POZ domain 278 382 IPR000210 GO:0005515(InterPro)
Tan01g3241 451 CDD BTB_POZ_ZBTB_KLHL-like 285 367 - -
Tan01g3241 451 SMART BTB_4 286 384 IPR000210 GO:0005515(InterPro)
Tan01g3241 451 ProSiteProfiles BTB domain profile. 286 345 IPR000210 GO:0005515(InterPro)
Tan01g3241 451 SUPERFAMILY POZ domain 275 382 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3241 K10523 - - csv:101218769 618.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3241 Tan-Chr1:87030373 Tan11g1270 Tan-Chr11:10886528 4.60E-71 dispersed
Tan01g3285 Tan-Chr1:88243815 Tan01g3241 Tan-Chr1:87030373 1.70E-12 transposed
Tan01g3241 Tan-Chr1:87030373 Tan11g1269 Tan-Chr11:10886528 1.20E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g259 . . . . . . . . Cmo04g02476 . Cma01g01052 . Car01g00927 . . . . Bhi04g01910 Tan11g1271 . . Hepe02g2263 . . Cla08g00595 . Cec08g0599 Cco08g0709 Clacu08g0719 . Cre08g0529 Cone4ag1411 Cone7ag1527 . . . . . Cme03g00549 . Blo18g00183 . . Bpe02g01644 . Bma01g00813 . Sed07g2802 Cmo01g01092 . . . Car04g02293 . Cpe01g02054 Cpe02g00843 Bhi09g01832 Tan01g3241 Cmetu01g1881 . . Mch11g1322 . . . . . . . . Lsi08g00438 . Chy03g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007616 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26488 PF00651 BTB 6.70E-23 CL0033 Tan TR