Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3290 ATGAGTTTTTCACTGTGGATGCGAACACGGTTGTTGTTGATCGGACTGCTGATAATGGCCGTTATGGGGTCGGTGATCGCCTTGTCGGGTTGCCCGAACCGGTGCGGCGAAGTGGAGATTCCATATCCTTTTGGACTCACTCCTGAATGCTCCCTCAATGAGGCATTTCTCGTCACTTGCAACAGCTCGTTTAATCCGAATAAGCCGTTCGTCGGCGATGTTCCGATGGTGAGTGTTTCGGTGGAAGATGGGGATTTGGTTATTGAAAATCCTGTGGCTCATTACTGTTTTGATGCCGAAGGGAATATGTCTGGCCGAAATGAAACGGTTCTGAAAACTAACAAGTTCGCGCTGTCGATGAAGAACATTAGCTATCGGAATATGCCGAATGGAACGTGCTCCGGCGTCGGCTGTTGTCAGATGGCAATTCCCAGCGGATTGAAACAGATGAATGTGAAGGTGACGGGGGGCGAGGTGACGAATGGGTCGGATATATTTTCGTGTGGGTACAGCTTCGTGGTGAAAGAGAGTGAGTTCAAATTTTCGTCGGCATACGTTCCTCACTTCCCCAACGCCACAGTGCCGATGGTGTTGGATTGGTCCATCGGCAACGAGTCGTGTGCGGCGGCTGCGGCCAGCCAAAGCTTTGCGTGTCAGGGAAATAGCAGCTGCCTGAACCCTGGCTCCATGGGGGGCTACCGCTGCAAGTGCCTGCAGGGATTCACTGGGAATCCATATTTGCCCCATGTTGGTTGCCAAGACATAAATGAATGTGATGATCCTAATGAAAATGAGTGTACGAATATATGCATAAATACGGTAGGAGGTTATAAGTGTCGATGCCCAAAGGGATACTCCGGCAGTGGGACAAAGGACGGCAATGGCTGCGTTCGCCGCCGCCGGATTCATGTTCTCCTATTAGTTTTTGGTATCGCCCTCGGCGTAATGGCCCTATTAGTGAGTTCCTCCTGGTTCTACATCGGCTTCAAGAGATGGAAACTCATAAAACTCAAAGAAAATTTCTTCGAACGGAACGGCGGATTAATGTTAGAGCAGCAGCTTTCAATTCGACACGAAACAGCGCATACCGCAAAAATCTTCACGGCAGAGGAATTACAGAAAGCGACAAACAACTACTCCGACGACCGAATCGTCGGCAAGGGCGGCTTCGGAACCGTCTACAAAGGCATCCTCCCAACCGGCGCTGCTATCGCCATCAAGAAATCGAAGATCGTCGACAAAACGCAAAACAAACAGTTCATCAACGAAGTCATCGTCCTCTCGCAGATCAATCACCGAAACACAGTCAAACTCCTAGGCTGTTGCTTGGAAGAAGAGGTTCCTCTTCTCGTCTACGAATTCGTCTCCAACGGTACGCTCTTCGATCACATCCACAAGAGAAAATCGCTGCCGTCGATTCCTTGGAAGATCCGCCTCAAAATCGCATCGGAAACCGCCGGAGTTCTCTCGTATCTTCACTCGTCGGCCACGATTCCGATCATTCACAGAGATGTGAAGTCCACGAACATTCTCCTCGACGAAAATTTCACTGCGAAGGTCTCCGATTTCGGTGCTTCGAAGCTAGTCCCCTTGGATCAGGTCGATTTGAACACGATCGTGCAAGGAACTCTCGGATACCTAGATCCAGAGTATTTGCAAACCAGTCAGTTGACGGAGAAGAGCGACGTGTACAGTTTCGGCGTGGTTCTGGTGGAATTGATGACCGGAAAAGTTCCGCTGTCCTTCAGTCGATCGGAGGAAGAACGGAATCTGTCGATGTACTTTCTAATTGCTCTGAAACAGAATCGGCTGGGAGAAATTTTGGATAAAAATTTGGGGGGCGATGTGGATTACGAGCAATTGAAGGAAGTAGCGAGCCTTGCGAAGAGGTGTTTGAGAGTGAAAGGGGAAGAACGGCCGACGATGAAGGAGGTTGCTACAGAGCTTGAAGGATTGTTTCACATGGCGTTTGGTCATCCATGGATTGTTGACGATAAATCTCCGTTGTTTGAAGAAACAGAGCTTTTGGTTAGTGAAGAAAAGGAAAACGAAGATCGTGTTTATTCTGTTCGTCGCGATGTGGAATCTGAAACTAATTGTACGGATGGGAGTAATCGATATGATAGTTTTCCCGCTAACCAAATAATACCAAAACCTCATTCTGGGAGGTAA 2172 48.76 MSFSLWMRTRLLLIGLLIMAVMGSVIALSGCPNRCGEVEIPYPFGLTPECSLNEAFLVTCNSSFNPNKPFVGDVPMVSVSVEDGDLVIENPVAHYCFDAEGNMSGRNETVLKTNKFALSMKNISYRNMPNGTCSGVGCCQMAIPSGLKQMNVKVTGGEVTNGSDIFSCGYSFVVKESEFKFSSAYVPHFPNATVPMVLDWSIGNESCAAAAASQSFACQGNSSCLNPGSMGGYRCKCLQGFTGNPYLPHVGCQDINECDDPNENECTNICINTVGGYKCRCPKGYSGSGTKDGNGCVRRRRIHVLLLVFGIALGVMALLVSSSWFYIGFKRWKLIKLKENFFERNGGLMLEQQLSIRHETAHTAKIFTAEELQKATNNYSDDRIVGKGGFGTVYKGILPTGAAIAIKKSKIVDKTQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSLPSIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKVPLSFSRSEEERNLSMYFLIALKQNRLGEILDKNLGGDVDYEQLKEVASLAKRCLRVKGEERPTMKEVATELEGLFHMAFGHPWIVDDKSPLFEETELLVSEEKENEDRVYSVRRDVESETNCTDGSNRYDSFPANQIIPKPHSGR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88338933 88347367 - Tan0008941.1 Tan01g3290 740714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3290 723 Gene3D Laminin 205 257 - -
Tan01g3290 723 ProSiteProfiles EGF-like domain profile. 254 291 IPR000742 -
Tan01g3290 723 Pfam Calcium-binding EGF domain 254 291 IPR049883 -
Tan01g3290 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3290 723 SUPERFAMILY Growth factor receptor domain 216 286 IPR009030 -
Tan01g3290 723 Pfam Wall-associated receptor kinase galacturonan-binding 31 68 IPR025287 GO:0030247(InterPro)
Tan01g3290 723 CDD EGF_CA 254 287 - -
Tan01g3290 723 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 653 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Tan01g3290 723 MobiDBLite consensus disorder prediction 688 723 - -
Tan01g3290 723 CDD EGF_CA 218 243 - -
Tan01g3290 723 FunFam Fibrillin 2 249 292 - -
Tan01g3290 723 Pfam Protein kinase domain 379 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3290 723 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 270 281 IPR000152 -
Tan01g3290 723 SMART egf_5 206 253 IPR000742 -
Tan01g3290 723 SMART egf_5 257 297 IPR000742 -
Tan01g3290 723 Gene3D Phosphorylase Kinase; domain 1 347 454 - -
Tan01g3290 723 SMART serkin_6 379 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3290 723 ProSitePatterns Calcium-binding EGF-like domain signature. 254 279 IPR018097 GO:0005509(InterPro)
Tan01g3290 723 Gene3D Transferase(Phosphotransferase) domain 1 455 657 - -
Tan01g3290 723 ProSitePatterns Protein kinases ATP-binding region signature. 385 408 IPR017441 GO:0005524(InterPro)
Tan01g3290 723 ProSiteProfiles EGF-like domain profile. 203 253 IPR000742 -
Tan01g3290 723 SUPERFAMILY Protein kinase-like (PK-like) 364 656 IPR011009 -
Tan01g3290 723 CDD STKc_IRAK 385 652 - -
Tan01g3290 723 FunFam Wall-associated receptor kinase 2 455 668 - -
Tan01g3290 723 Gene3D Laminin 258 298 - -
Tan01g3290 723 FunFam Wall-associated receptor kinase 2 349 454 - -
Tan01g3290 723 SMART egfca_6 207 253 IPR001881 GO:0005509(InterPro)
Tan01g3290 723 SMART egfca_6 254 297 IPR001881 GO:0005509(InterPro)
Tan01g3290 723 ProSiteProfiles Protein kinase domain profile. 379 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3290 723 Pfam EGF-like domain 218 244 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3290 Tan-Chr1:88338933 Tan11g1220 Tan-Chr11:10227376 6.50E-184 dispersed
Tan03g0923 Tan-Chr3:65560596 Tan01g3290 Tan-Chr1:88338933 3.20E-78 transposed
Tan08g1802 Tan-Chr8:69989573 Tan01g3290 Tan-Chr1:88338933 8.70E-79 transposed
Tan01g3290 Tan-Chr1:88338933 Tan11g1218 Tan-Chr11:10164484 5.50E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67077 PF00069 Pkinase 9.20E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3290 - - - 0.0