Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3309 ATGGTGCCTTCGGGGCCATCCACTCCCATTGGTGGTGCGCAGTCTGTTTCACCATCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCCCCACGAACTCAGTTTAGTAGTATGAATATGCTTGGTAATATGCCCAGTATGTCTTCTCTCCTTAATCAGTCATTTGGGAATGGGGTTCCGAATTCTGGGCCCTCAGGTCTTGGAAACAGCCAACGAGGAGGTATGGACCCGGGTTCTGAGTCAGATGCATTTTCACTTGTTGGCAATGGTGTGAACTTCAACAATACTCCATCGTCATTGGTGGCATCAAATACAGCAAACCCTGGTTCATCTAGTCAAGTTTCAGGGCCACAATTTTCAAACCATTCTAGCAGCCAAATAATACCCAATCAACAGCAGCCACAGCAAATTGAACCCCAGAACTTCCAACATGGTCAGCATTCAATGCAACAGTTTGCTACCTCTAATAACACACAGCAGTCGCAGCAGCAACAACAACATCAATTCCAACCTATTCGAGGAAGCTTATGCGGTGTTGGACCTGTCAAGGTAGAGCCTCAAATGAATAATAATGATCTTCAAGGGCAGCAACTACAGCAGCAGCAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCGCAACAACTTCAATCAATGAGAAGCTTGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCGTTGTTTCTACAGCAGCAGCATCAACATCAACAGCAACAGCAACAACAACAGTTACTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCTCAGATTAATCTTTTGCAACAACAAAGACTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATTCCTCAGCAAAGACCGCATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAACCAGTTTATGAACCTGGCATGTGTGCTCGACGTTTAACAAGTTATATGTGCCAACAACAACAGAGGCCTGAAGACAACAATATTGAGTTCTGGAGGAAATTTGTTGCGGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGTGTCTCCATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCAACCTTTGAAGTTCTTCCAAGGCTGTTCAAAATCAAGTATGAAAGTGGAACTCTTGAAGAGCTTCTATACGTTGATATGCCCCGGGAATATCATAATTCCTCTGGACAAATTGTCCTAGATTATGCAAAAGCAATACAAGAAAGCGTTTTTGAGCAACTTCGTGTTGTTCGTGACGGCCAACTTCGGATAGTTTTTTCTCCAGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGCCATGAAGAGCTTATTCCTCGAAGGTTACTAATACCTCAGGTTAGTCAGCTGGGGGCAGCTGCTCAGAAGTATCAGACTGCTATTCAAAATGCATCATCTAACTTGTCTACTCCAGAGTTGCAAAATAATTGCAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATATGTCCGGTGCCTTCAGATCTCAGAAGTTGTCAATAGTATGAAGGACTTGATAGATTACAGCCAAGAAACTTCGACTGGACCAATTGAGAGTTTGGCCAAGTTTCCACGGAAGACAAATGCTTCACCAGGATTCCACAGCCAAGCTCAAAACACCGAGCAGCAATTACCTCAGCCCCAGCAAACAATCAATCAAAATGCAAACGGCGACCAAAACTCTGTTCCGGCTGCTGCTATGCAGCTTGCTGCTAACAATGGTGTTCCGAGTGCAAATAACTCTGCAAATCCAGCGTCAACATCATCTCCTGCTAGTACCATCGTTGGGTTACTCCACCAGAATTCCATGAACTCCAGACAGCAGAACTCTATCAATAGCGCTGGCAGCCCTTATGCCGGGAATTCTGTGCAGATATCGTCCCCAGGTTCCTCCACCACGATTGCTCAGGCACAAGCGAACCCCTCCTTCCAATCGCCTACATTGTCCTCACCCAACAATCCTCCACAGTCCTCAATTGGCGCTGCAACAACTACCAATCACATGAGTGCCACCAACTCTCCGGCAAATGTTCCCTTGCAACAGCCAACACACTCTTCCGAAGCCGATCAAAACGATTCCCAGAGCTCTGTGCAAAAGATTATTCAGGAATACATGATGTCAAACCAATTAAACGGGATGAACACAATGACTGGTGTTTCCTCTCTAGCAGAGGATGCGAAACCTGTCAACGGGATGTTGCCAGCAAACAACATGTTGAGTCTCAATGGACGAAACTGCCTCGTCGGGAGTGGAACTGCTAATAATGTTTCTGGTATCCGGAGCGCAGGATATGGCTCGATGGGTGGGGGACTTGCTCAGGCTTCTATGGTCAATGGTATGAAGTCTGCAATGGGAAATAACTCGATTTCGAATGGGAGAATCGGGATGGCGTCATTGGCTCGAGAACAGAGCATAAATCATCAAGATTTGGGGGACCAGCTCCTTAATGGACTGGGAGCAGTAAATGGATTTAATAATCTTCAATTCGATTATTGA 2724 45.48 MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSSMNMLGNMPSMSSLLNQSFGNGVPNSGPSGLGNSQRGGMDPGSESDAFSLVGNGVNFNNTPSSLVASNTANPGSSSQVSGPQFSNHSSSQIIPNQQQPQQIEPQNFQHGQHSMQQFATSNNTQQSQQQQQHQFQPIRGSLCGVGPVKVEPQMNNNDLQGQQLQQQQQLQSMRNLGPVKLEPQQLQSMRSLGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQLLSMSRQSSQAAAAQINLLQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKPVYEPGMCARRLTSYMCQQQQRPEDNNIEFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSQETSTGPIESLAKFPRKTNASPGFHSQAQNTEQQLPQPQQTINQNANGDQNSVPAAAMQLAANNGVPSANNSANPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSVQISSPGSSTTIAQAQANPSFQSPTLSSPNNPPQSSIGAATTTNHMSATNSPANVPLQQPTHSSEADQNDSQSSVQKIIQEYMMSNQLNGMNTMTGVSSLAEDAKPVNGMLPANNMLSLNGRNCLVGSGTANNVSGIRSAGYGSMGGGLAQASMVNGMKSAMGNNSISNGRIGMASLAREQSINHQDLGDQLLNGLGAVNGFNNLQFDY 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 89716149 89733218 + Tan0009515.1 Tan01g3309 740733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3309 907 MobiDBLite consensus disorder prediction 8 41 - -
Tan01g3309 907 MobiDBLite consensus disorder prediction 64 184 - -
Tan01g3309 907 MobiDBLite consensus disorder prediction 64 91 - -
Tan01g3309 907 Pfam LIM-domain binding protein 342 596 IPR029005 -
Tan01g3309 907 PANTHER LIM DOMAIN-BINDING PROTEIN 201 903 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Tan01g3309 907 MobiDBLite consensus disorder prediction 605 635 - -
Tan01g3309 907 MobiDBLite consensus disorder prediction 100 184 - -
Tan01g3309 907 MobiDBLite consensus disorder prediction 1 41 - -
Tan01g3309 907 MobiDBLite consensus disorder prediction 599 635 - -
Tan01g3309 907 MobiDBLite consensus disorder prediction 679 772 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3309 Tan-Chr1:89716149 Tan11g1202 Tan-Chr11:9954597 4.00E-308 dispersed
Tan07g0291 Tan-Chr7:5937509 Tan01g3309 Tan-Chr1:89716149 1.90E-97 transposed
Tan01g3309 Tan-Chr1:89716149 Tan11g1201 Tan-Chr11:9954597 4.00E-308 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3309 - - - 0.0