Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3310 ATGTCCCGATCGCTGGTGCAGCCGATCGGACAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTAAAGAGACATGGTCTTCGCTTCGAGATTGCTTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATCTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCGAAAACAAAAGATTTAAAAGCAGCTTTTGACACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGGCTCATGCGTGATATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAAAAACAGTTCCCAATTAAACGTTCTCCTATGAGAATACGATATACTGTACCTGAACAGAACTTTCCATCTCTTCTTGAGAAGTTAAATTCCTGGAATGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTTTATCGGGACTGTAATCCATTAATGACTGAACTACAAGGGAGATTTGAAGTTCTCTCTTTCTGTTTGCATGAGGAAGGGGACACCAATGTGGATCAATATGATGACGATTTTGAGAACATAGAACTTCCACCCAAGCAAATCAAAGAATCGTCCATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCGGTCGAGAAGGAGGAAGGGAAACGCTGCAGCACATGCAACGTGGTTGTGGGGGATTCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACATCAAGCGCAAAACCAAGAGTCTCCCTCCCCTGACCGAAGAAGAGTGCATGGTAGAATTGGCAATGGACGACTCCGAGTCTGACCTAAAAGACTATTCATTTTGA 1062 42.47 MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNSWNASIISNDQSGNQQRSVICELDPSFYRDCNPLMTELQGRFEVLSFCLHEEGDTNVDQYDDDFENIELPPKQIKESSIPQLSEALQKQTISVEKEEGKRCSTCNVVVGDSTQFREHHKSEWHKHNIKRKTKSLPPLTEEECMVELAMDDSESDLKDYSF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 89733915 89737049 - Tan0011034.1 Tan01g3310 740734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3310 353 Gene3D - 100 172 IPR037188 -
Tan01g3310 353 Gene3D - 174 251 - -
Tan01g3310 353 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Tan01g3310 353 FunFam SBDS, ribosome maturation factor 100 172 - -
Tan01g3310 353 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
Tan01g3310 353 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Tan01g3310 353 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 248 IPR039100 -
Tan01g3310 353 FunFam SBDS, ribosome maturation factor 3 96 - -
Tan01g3310 353 Pfam SBDS protein, C-terminal domain 174 239 IPR046928 -
Tan01g3310 353 Gene3D - 1 96 IPR036786 -
Tan01g3310 353 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Tan01g3310 353 SUPERFAMILY beta-beta-alpha zinc fingers 291 323 IPR036236 -
Tan01g3310 353 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Tan01g3310 353 ProSitePatterns Zinc finger C2H2 type domain signature. 294 316 IPR013087 -
Tan01g3310 353 NCBIfam ribosome assembly factor SBDS 13 230 IPR002140 GO:0042256(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3310 K14574 - csv:101215380 644.81