Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3331 ATGTCGTTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCCAGGCGTAGTTTTGAGTTGAGACTGCCTGGTCACCACCGAGGTAAATCTCATGGATCAGTCCACGATCTGCATGACCAACCTCTGGTAATTCAAACCAGTCGCTGGGCTAGCCTCCCACCTGAGCTATTGCGGGATGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCTGAATTCTCTGGGAAAATTACCTTCCCTGTCTCCTTAAAGCAGCCAGGAACTCGCGATGGAACGATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAACGGGAAGTTTCTTCTTTCTGCAAAAAGAACAAGGAGAACAACTTGCACCGAGTATGTGATCTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCACCACCTGGCCGTAGCCGGAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACTGGTAGCTATGACGTTGCTCAAGTCTCCTATGAGCTGAACGTTCTTGGCACAAGAGGCCCCAGAAAGATGCACTGCACGATGCACTCCATCCCCGCCTCATCTCTTGAGCCTGGTGGCACTGTTCCAGGCCAGCCCGAGGTCGTCACTCGACTCCTTGGGGATTCGTTTCGAAGTATATCTTTCTCGAAGTCTGTCTTCAATCCTACAGAGTTTAATAGTTCCCGCTTCTCTGATATTGTTGGTCCACGGGATGAAGATGAAGTGGGGAAGGAGAGACCATTGATTCTTCGGAACAAGCCACCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGGGGGCGAGTAACTGTTGCCTCTGTCAAAAACTTTCAACTGATAGCTGCAACAGAGCCTTCTTCCGTAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCATTCCGACCATGACAAGATCATTCTTCAATTCGGGAAGGTCGGAAAAGACATGTTTACAATGGATTACCGATATCCGTTGTCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 46.56 MSFRSIVRDVREGFGSLSRRSFELRLPGHHRGKSHGSVHDLHDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDVAQVSYELNVLGTRGPRKMHCTMHSIPASSLEPGGTVPGQPEVVTRLLGDSFRSISFSKSVFNPTEFNSSRFSDIVGPRDEDEVGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSVATNQSQPNQHAQSSHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 90649740 90654579 - Tan0017871.1 Tan01g3331 740755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3331 430 CDD F-box_AtTLP-like 53 97 - -
Tan01g3331 430 MobiDBLite consensus disorder prediction 366 386 - -
Tan01g3331 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Tan01g3331 430 MobiDBLite consensus disorder prediction 366 381 - -
Tan01g3331 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Tan01g3331 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Tan01g3331 430 Pfam Tub family 114 425 IPR000007 -
Tan01g3331 430 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Tan01g3331 430 FunFam Tubby-like F-box protein 110 430 - -
Tan01g3331 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Tan01g3331 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Tan01g3331 430 PANTHER TUBBY-RELATED 48 429 - -
Tan01g3331 430 Gene3D - 48 101 - -
Tan01g3331 430 FunFam Tubby-like F-box protein 48 101 - -
Tan01g3331 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Tan01g3331 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Tan01g3331 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Tan01g3331 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Tan01g3331 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Tan01g3331 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Tan01g3331 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3331 Tan-Chr1:90649740 Tan11g1138 Tan-Chr11:8989235 1.00E-208 dispersed
Tan01g3331 Tan-Chr1:90649740 Tan10g0947 Tan-Chr10:8248324 2.20E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26492 PF01167 Tub 1.30E-118 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3331 K19600 - csv:101206041 837.025