Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3335 ATGCTTGGCGAGTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGGGACGCCTCCGTGCCGGAGACGACTCACCGCCACGATGGGTTCATCGGAGACGGCGGGGCAGGGGCGGCGGAGGATAATAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAACGGCGGAGGAGACGATGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTGGCTCTCTTGAAAATACGGTCGGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCCTTGTGGGAACAAGTTTCCAGGAAATTAAGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACCAAAGAAGTTCGAAGTGGGAAACCAGATAGCAAAACTTACAAATTTTTTGAACAATTAGAAGCTCTTGAAAATCACCCTCCTCTCAATTTCCACTCCCATTTGTCTAAATCACCACCTCCCACAATGGCAGCTCCGCCTCCAACCACCCTCATTTCTCACATTCCTTCAACTACTGTTCCATCGACCACCACCACCACCACCGCCGTACCCCACTTGATGAACATTTCATTCTCTCAACCAAACCCCACAATTCACCTCCAATCCCCGCCCCCTCCCGCTCCGTTGCCATTGAATAACCCTACAAGCTTAGCCACCGTCGCTCCGCCTTTTCAAACCACCAACGTCTCTTTGGGGGCTGCGGGAACGGGGTTTCAGAACATTGATGCGGATCTCATCTCCAATTCGACGTCTGATGATGTCGACTCTTCGACGTCATCAGATGAAGCTTCGAGAAGGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGGTTGATGAGGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAGGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGTTGCAAGAAATGACCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCTAAAGACGCCGCCATTACAACCTTCCTCCAAAAAATAACAGAATCCCAACACAATAACAACAACTCCTCACAACCGTCGCCGTCGCCACCGCCACCGCCACCGCCACAACAACAACCAATCTCGACATCAAATCCAACACCGGTCGCACAACCACCGCCACCGCCGCCACCGCAAGCTTCCACATTGCAAGTTGTTGTTCCAAATTCCACCCCACAAAAATTGGTGACCAATAATGAATTGTTGCAAATGGAGATTACCAAAACTGATCACAATGGTGGTGAAAATTATAGTATGAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATACAATTAAGAACAAATCTTGAAGCTAAATATCAAGAAAATGGACCAAAAGGGCCATTGTGGGAAGAGATATCTTCAGCCATGAAGAGACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAAAGTGAAGGAGAGTAAAAAAACAAGGCCTGAGGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTACAAGGAGAAGAACAGCAGCAGCAGCAACAATAACAACGGCAACAGGCTCGATAACGTCGTAATCGGATCTTCGACACCGACTATGCCACATCAACAGCAGCCGTTGATGGTTCGGCCTGAGCAACAATGGCCTCCGCAGCAAGAGATCGTCCGGCCCGACTCAGGCAATGAAGAGATGGAGAGCGAACCAATGGATCGGGATGATAAAGATGACGACGACGATGACGATGACGAAGAGGATGAGGACGAGGGTGGCGGGAACTATGAGATTGTGGCAAGCAAGCCAGCTTCAGTGAGTGCAGCAGAGTGA 1950 48.31 MLGESTTSVLGGGAGGDASVPETTHRHDGFIGDGGAGAAEDNNNNSGEDERGRNGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLRELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKSPPPTMAAPPPTTLISHIPSTTVPSTTTTTTAVPHLMNISFSQPNPTIHLQSPPPPAPLPLNNPTSLATVAPPFQTTNVSLGAAGTGFQNIDADLISNSTSDDVDSSTSSDEASRRRRRKRKWKDFFERLMREVIQKQEEMQKRFLEAIEKREQERVVREEAWRLQEMTKINREREILAQERSMAAAKDAAITTFLQKITESQHNNNNSSQPSPSPPPPPPPQQQPISTSNPTPVAQPPPPPPPQASTLQVVVPNSTPQKLVTNNELLQMEITKTDHNGGENYSMSPASSSSRWPKVEVQALIQLRTNLEAKYQENGPKGPLWEEISSAMKRLGYNRNAKRCKEKWENINKYFKKVKESKKTRPEDSKTCPYFHQLDALYKEKNSSSSNNNNGNRLDNVVIGSSTPTMPHQQQPLMVRPEQQWPPQQEIVRPDSGNEEMESEPMDRDDKDDDDDDDDEEDEDEGGGNYEIVASKPASVSAAE 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 90917922 90921166 + Tan0019978.1 Tan01g3335 740759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3335 649 Gene3D - 69 130 - -
Tan01g3335 649 Gene3D - 461 522 - -
Tan01g3335 649 FunFam Trihelix transcription factor GT-2 69 130 - -
Tan01g3335 649 MobiDBLite consensus disorder prediction 1 68 - -
Tan01g3335 649 MobiDBLite consensus disorder prediction 369 417 - -
Tan01g3335 649 CDD GT1 460 524 - -
Tan01g3335 649 ProSiteProfiles Myb-like domain profile. 453 517 IPR001005 -
Tan01g3335 649 MobiDBLite consensus disorder prediction 378 415 - -
Tan01g3335 649 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Tan01g3335 649 MobiDBLite consensus disorder prediction 607 633 - -
Tan01g3335 649 CDD GT1 67 132 - -
Tan01g3335 649 FunFam Trihelix transcription factor GT-2 461 522 - -
Tan01g3335 649 MobiDBLite consensus disorder prediction 263 287 - -
Tan01g3335 649 MobiDBLite consensus disorder prediction 550 649 - -
Tan01g3335 649 MobiDBLite consensus disorder prediction 550 587 - -
Tan01g3335 649 Coils Coil 302 322 - -
Tan01g3335 649 SMART sant 457 519 IPR001005 -
Tan01g3335 649 SMART sant 65 127 IPR001005 -
Tan01g3335 649 PANTHER FI21293P1 43 614 - -
Tan01g3335 649 MobiDBLite consensus disorder prediction 44 58 - -
Tan01g3335 649 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Tan01g3335 649 Pfam Myb/SANT-like DNA-binding domain 459 546 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3335 Tan-Chr1:90917922 Tan07g0890 Tan-Chr7:16316341 4.60E-88 dispersed
Tan01g3335 Tan-Chr1:90917922 Tan01g3336 Tan-Chr1:91008285 1.10E-100 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26494 PF13837 Myb_DNA-bind_4 8.50E-22 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3335 - - - 0.0