Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3336 ATGGATGTCGACACCGGCGTGGCGGTGGCGCCGCCGGCCGAAGCTTTAGAATCCCATGAAGTTGGTGGCGGCGACAGCGGGTCGAATTCCGGTGAAGAAGATCATAAGGGGTCGTTGTTATTTGAAGATGGAGAGAAGAATTTTGGTGGAAACCGGTGGCCTCGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCCGATATGGATGCAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAGTTGGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACCAAAGAAGGTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCTGATGAATTGGAGGCTTTTGGTATTCATCATCACAATCACATTTCATTTCCTTCTCACCACCACTTGCCGTTGCCGCTGCCGCTGCCGCCAGTCCCTCGGCCGACGACAACGCCGCCATCGCCGCCGCCGAAAATAATCACTTCTACTGTTCCATCGACCATGAATGCAACAAATTACAACAACTCCTCGCCTCCCAAATCCTCTAACCCTCTTTCCAATTTGCCAAACATGGCTGCTGCCAATGGGATGTTTTCGAGCTCCACGTCATCGTCGACGGCGTCGGAGGAAGATCCGTTTCGGAGCAGGAGGAAGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTTGTGAGGTTGACAAAGGAGGTGATAGAGAAGCAAGAGGGGCTTCAACAAAAGTTCTTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAGATGACAAGGATTAACCAAGAACATGAAGTTCTAGTCCAAGAGATGTCCATGGCTGCCGCGAAAGACGCCGCGGTGGTTGCGTTTTTGCAAAAACTAGCACCCCCATCTCCTTCTCCGCCGCCACCACCACCGTTGCAGAATAGCGAGAATGAAAAGTCGATGACCACAACTATTGCAAACCATCTTTCGACTCAGCCTCATAAGGGCGAGAATAATAATGGAAAGGTGAGCACCGGTGTAGGAAGCCCTTCGAGATGGCCGAAGGCGGAAGTAGAAGCATTGATAAGGCTTAGGACAGAATTGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAAGAGATTTCAGCAGCCATGAGAGGGCTTGGATACAATAGAAGTTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGCCCCTACTTTCACCAATTGGATGCTCTATACAAAGAGAAAGAGAAAAACATGAGTTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCACCTCCATTTCAGGCCAATCAAATGATGGGAAATTTACAAAGAATAAATGGTGAGGGAAATCAAGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAAGATGATGATGGAGGAAGTAGCAGCACAGATGTTGAAGATTGA 1602 45.26 MDVDTGVAVAPPAEALESHEVGGGDSGSNSGEEDHKGSLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRSGKSDNSKKVYRFSDELEAFGIHHHNHISFPSHHHLPLPLPLPPVPRPTTTPPSPPPKIITSTVPSTMNATNYNNSSPPKSSNPLSNLPNMAAANGMFSSSTSSSTASEEDPFRSRRKRRKKRKWSDFFVRLTKEVIEKQEGLQQKFLEALERIENQRKLRDEAWRMKEMTRINQEHEVLVQEMSMAAAKDAAVVAFLQKLAPPSPSPPPPPPLQNSENEKSMTTTIANHLSTQPHKGENNNGKVSTGVGSPSRWPKAEVEALIRLRTELEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYFHQLDALYKEKEKNMSFDINSQMEPLMVEPEQQWPPPPFQANQMMGNLQRINGEGNQEEDDEEEEEEEDDDGGSSSTDVED 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 91008285 91010870 - Tan0006418.1 Tan01g3336 740760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3336 533 MobiDBLite consensus disorder prediction 321 335 - -
Tan01g3336 533 Pfam Myb/SANT-like DNA-binding domain 51 131 IPR044822 -
Tan01g3336 533 Pfam Myb/SANT-like DNA-binding domain 372 459 IPR044822 -
Tan01g3336 533 MobiDBLite consensus disorder prediction 160 179 - -
Tan01g3336 533 MobiDBLite consensus disorder prediction 508 533 - -
Tan01g3336 533 MobiDBLite consensus disorder prediction 180 228 - -
Tan01g3336 533 ProSiteProfiles Myb-like domain profile. 45 109 IPR001005 -
Tan01g3336 533 MobiDBLite consensus disorder prediction 350 375 - -
Tan01g3336 533 MobiDBLite consensus disorder prediction 320 339 - -
Tan01g3336 533 MobiDBLite consensus disorder prediction 481 533 - -
Tan01g3336 533 CDD GT1 51 116 - -
Tan01g3336 533 FunFam Trihelix transcription factor GT-2 374 435 - -
Tan01g3336 533 Coils Coil 500 520 - -
Tan01g3336 533 FunFam Trihelix transcription factor GT-2 53 114 - -
Tan01g3336 533 PANTHER FI21293P1 28 512 - -
Tan01g3336 533 SMART sant 370 432 IPR001005 -
Tan01g3336 533 SMART sant 49 111 IPR001005 -
Tan01g3336 533 MobiDBLite consensus disorder prediction 1 52 - -
Tan01g3336 533 MobiDBLite consensus disorder prediction 490 505 - -
Tan01g3336 533 MobiDBLite consensus disorder prediction 160 239 - -
Tan01g3336 533 ProSiteProfiles Myb-like domain profile. 372 430 IPR001005 -
Tan01g3336 533 MobiDBLite consensus disorder prediction 350 368 - -
Tan01g3336 533 Coils Coil 256 276 - -
Tan01g3336 533 CDD GT1 372 437 - -
Tan01g3336 533 Gene3D - 53 114 - -
Tan01g3336 533 Gene3D - 374 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3336 Tan-Chr1:91008285 Tan07g0890 Tan-Chr7:16316341 2.20E-88 dispersed
Tan01g3335 Tan-Chr1:90917922 Tan01g3336 Tan-Chr1:91008285 1.10E-100 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26495 PF13837 Myb_DNA-bind_4 1.30E-22 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3336 - - - 0.0