Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3340 ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCTGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGGCATTTGCAGTAGATGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCCCCAGTTCAGGAGGAGAAGGTCGTGGTAACTGGGAAAAAGAAGGGTAAGAAGGGCAATTCAAAAGCTTCACAAGTTAAAGAGGAGGAGGATGATGATGATGGCGATGGTGTTTCAGAGATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAATAACAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAGGAGGAGGGAGAGGATGGTGCTGATGATGAATCTGTGTTAACTGCAGAAAAGGATGATGATGTAGGGAATGATGATTCTGCAATCAAGTTTTCAGGGAAGAAGAAGTCGTCGAAGTCTTCCAAGAGTGGTTTTTCTGCAGTGTCAGCATTCAGTTCCCTTGATGACGAGAAAGATGAAGATGTAATTGATAATGAGATCGAAGTTGTTGAAGAGATTGACGATGAGCCTGCCATTGCATTTACAGGTAAGAAGAAGCCATCAAAAGGTAGTAAGAAGGGTGGGAATGCCTTTTCAGGTTTTAGTGGTCTTGATTATGAGGATGAGGACAGAAATGATGATAAGGATGAGGATGAAGATGCTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGGTTCAAAGAAAAGTGGCAATTCGTTTAGTGCAACATTTGCTGATGGGGAGAATGATGATGATGTTTCTATTCCAGAACCAAATAAGTTAGACAATGATGGTGTTGATGAAGACGATGCCAATGTTATTGCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAGGTGATGAAAATGCGCTGGGCAATGAAATTAGAGATGTAGTCATACCTGAAATACTTAATACAACAAGTAGCAATTTTGATTCTGATTTATCTAAAGCTAACAAGACGGAGGGGGTGGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGTCTACTATACCAAAACCAGCAGACCCTCCTCTTTCTTCTCAAGAGGCCAAAGTTGAAAATCCACCTGAGCTTGTAGCTCCTCCTGAGGCATCAGCTGAAAAGGAAGCTGAAGATGAGAACACAGAATCGGCTGCAGCAAGGAAGAAAAAAAAGAAGAAGGAGAAGGAGAAGGAGAAAAAGGCTGCAGCAGCAGCTGCTGCTGCTGAAGGGAATGATGAGAAAATTGAGGAGGTAAAGACTGAAGTTATAGAACCCAAAAAAGGTACTGCAAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAAGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCAAGAAGAACTTGAAAGGCAAGCCGAGGAGGCTAAGCGTAGGAAGAAGGAAAGAGAAAAAGAGAAGCTCCTAAAGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTGCGGGGGGCTTACCTTTGTCTACATCTGACCCCAGTGCACCTGCCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCAGCCCATCATCAAACAAATGGTAGTGTGCAAGCTAAGGTAGTGGAACATATAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTTGAGTCTGAGAAGATTGAACCTTTTGAGTCAATGCACGTGGAGGAAAAATCAGATGTTATTGAGGCTACTGAAGATAATGAAATTCAAGAAGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGCTGTTGATCTTTTCTCAAAAAGTTCCTTTGCAGATGAGGAGCTTGAATCAGAACCTGAGAATGACATGAAAAAGGATAGAAAGAATGGTGTGCCAATGCCACGTGATGCAGGTGCTAAGCCAACTGTTCCTGCTCTTTCTCAGCCTGAGGTTGAGATTGTTGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAACATCAACTTCAGATGCTACTCCTAAACAACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGCCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTGCTTGTTATTGATACCCCTGGGCACGAATCATTTACAAACTTACGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATCGAATCTCTTAATCTTTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTCGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACGGAACTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACTTGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACACCCCACCCAATGAAGGAACTCCGAGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTTTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCGTTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAGATTTTGCCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTCGATGTAATTGAAGGCATTGCCAAGGTTGGGACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAATTGGGCACTCTCCGGAGGAGCAGCAAAAGATGTACGGTAGGCATTTTGATTTGGAGGATGAACTTGTCAGTCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGATGATTTGTCCACGGAGGAGTGGAGACTGGTGGTGAAATTGAAGAACCTTTTCAAGATACAATGA 4053 41.89 MGRKKPTARDDDSAPAAAQGGGKSKKKAFAVDDDEYSIGTELSEEAPVQEEKVVVTGKKKGKKGNSKASQVKEEEDDDDGDGVSEIVITGKKKGKSKKGGNNSAFTASSFGLLEEEGEDGADDESVLTAEKDDDVGNDDSAIKFSGKKKSSKSSKSGFSAVSAFSSLDDEKDEDVIDNEIEVVEEIDDEPAIAFTGKKKPSKGSKKGGNAFSGFSGLDYEDEDRNDDKDEDEDATTISFSGKKKKSAKGSKKSGNSFSATFADGENDDDVSIPEPNKLDNDGVDEDDANVIAFSGKKKSSKKKSSSTFTALGDENALGNEIRDVVIPEILNTTSSNFDSDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGSTIPKPADPPLSSQEAKVENPPELVAPPEASAEKEAEDENTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEVIEPKKGTAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASAGGLPLSTSDPSAPAKRPKYQTKKSKPAHHQTNGSVQAKVVEHIEEKIQEKDVAETEIFESEKIEPFESMHVEEKSDVIEATEDNEIQEDEDEWDAKSWDDAAVDLFSKSSFADEELESEPENDMKKDRKNGVPMPRDAGAKPTVPALSQPEVEIVDKGKRKDDAVKKKTSTSDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIIGHSPEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTEEWRLVVKLKNLFKIQ 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 91191931 91215427 + Tan0013819.1 Tan01g3340 740764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3340 1350 MobiDBLite consensus disorder prediction 681 755 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 413 432 - -
Tan01g3340 1350 FunFam Eukaryotic translation initiation factor 5B 1213 1350 - -
Tan01g3340 1350 NCBIfam small GTP-binding protein domain 763 888 IPR005225 GO:0005525(InterPro)
Tan01g3340 1350 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1083 1212 IPR036925 -
Tan01g3340 1350 Gene3D Translation factors 1213 1350 - -
Tan01g3340 1350 Pfam Elongation factor Tu GTP binding domain 761 970 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3340 1350 FunFam Eukaryotic translation initiation factor 5B 1100 1206 - -
Tan01g3340 1350 FunFam Eukaryotic translation initiation factor 5B 752 980 - -
Tan01g3340 1350 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 421 1349 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Tan01g3340 1350 MobiDBLite consensus disorder prediction 453 566 - -
Tan01g3340 1350 Pfam Elongation factor Tu domain 4 1220 1293 IPR029459 -
Tan01g3340 1350 CDD IF2_aeIF5B_IV 1221 1316 - -
Tan01g3340 1350 Coils Coil 412 448 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 626 651 - -
Tan01g3340 1350 FunFam eukaryotic translation initiation factor 5B 981 1100 - -
Tan01g3340 1350 Pfam Translation-initiation factor 2 1087 1199 IPR023115 -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 1 320 - -
Tan01g3340 1350 Coils Coil 1195 1215 - -
Tan01g3340 1350 CDD IF2_eIF5B 761 971 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 685 709 - -
Tan01g3340 1350 CDD aeIF5B_II 982 1092 - -
Tan01g3340 1350 Gene3D - 752 980 IPR027417 -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 170 188 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 333 610 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 333 349 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 363 378 - -
Tan01g3340 1350 Gene3D Translation factors 981 1099 - -
Tan01g3340 1350 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 758 974 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3340 1350 SUPERFAMILY Translation proteins 1217 1349 IPR009000 -
Tan01g3340 1350 Gene3D - 1100 1206 IPR036925 -
Tan01g3340 1350 PRINTS GTP-binding elongation factor signature 878 887 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3340 1350 PRINTS GTP-binding elongation factor signature 842 853 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3340 1350 PRINTS GTP-binding elongation factor signature 826 836 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3340 1350 PRINTS GTP-binding elongation factor signature 762 775 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3340 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 753 1049 IPR027417 -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 270 284 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 130 146 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 115 129 - -
Tan01g3340 1350 Coils Coil 482 549 - -
Tan01g3340 1350 MobiDBLite consensus disorder prediction 728 749 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3340 Tan-Chr1:91191931 Tan01g4114 Tan-Chr1:105988584 4.20E-27 dispersed
Tan01g3340 Tan-Chr1:91191931 Tan01g3341 Tan-Chr1:91191931 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3340 K03243 - mdm:103425307 1505.35