Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3341 | ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCTGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGGCATTTGCAGTAGATGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCCCCAGTTCAGGAGGAGAAGGTCGTGGTAACTGGGAAAAAGAAGGGTAAGAAGGGCAATTCAAAAGCTTCACAAGTTAAAGAGGAGGAGGATGATGATGATGGCGATGGTGTTTCAGAGATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAATAACAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAGGAGGAGGGAGAGGATGGTGCTGATGATGAATCTGTGTTAACTGCAGAAAAGGATGATGATGTAGGGAATGATGATTCTGCAATCAAGTTTTCAGGGAAGAAGAAGTCGTCGAAGTCTTCCAAGAGTGGTTTTTCTGCAGTGTCAGCATTCAGTTCCCTTGATGACGAGAAAGATGAAGATGTAATTGATAATGAGATCGAAGTTGTTGAAGAGATTGACGATGAGCCTGCCATTGCATTTACAGGTAAGAAGAAGCCATCAAAAGGTAGTAAGAAGGGTGGGAATGCCTTTTCAGGTTTTAGTGGTCTTGATTATGAGGATGAGGACAGAAATGATGATAAGGATGAGGATGAAGATGCTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGGTTCAAAGAAAAGTGGCAATTCGTTTAGTGCAACATTTGCTGATGGGGAGAATGATGATGATGTTTCTATTCCAGAACCAAATAAGTTAGACAATGATGGTGTTGATGAAGACGATGCCAATGTTATTGCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAGGTGATGAAAATGCGCTGGGCAATGAAATTAGAGATGTAGTCATACCTGAAATACTTAATACAACAAGTAGCAATTTTGATTCTGATTTATCTAAAGCTAACAAGACGGAGGGGGTGGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGTCTACTATACCAAAACCAGCAGACCCTCCTCTTTCTTCTCAAGAGGCCAAAGTTGAAAATCCACCTGAGCTTGTAGCTCCTCCTGAGGCATCAGCTGAAAAGGAAGCTGAAGATGAGAACACAGAATCGGCTGCAGCAAGGAAGAAAAAAAAGAAGAAGGAGAAGGAGAAGGAGAAAAAGGCTGCAGCAGCAGCTGCTGCTGCTGAAGGGAATGATGAGAAAATTGAGGAGGTAAAGACTGAAGTTATAGAACCCAAAAAAGGTACTGCAAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAAGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCAAGAAGAACTTGAAAGGCAAGCCGAGGAGGCTAAGCGTAGGAAGAAGGAAAGAGAAAAAGAGAAGCTCCTAAAGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTGCGGGGGGCTTACCTTTGTCTACATCTGACCCCAGTGCACCTGCCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCAGCCCATCATCAAACAAATGGTAGTGTGCAAGCTAAGGTAGTGGAACATATAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTTGAGTCTGAGAAGATTGAACCTTTTGAGTCAATGCACGTGGAGGAAAAATCAGATGTTATTGAGGCTACTGAAGATAATGAAATTCAAGAAGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGCTGTTGATCTTTTCTCAAAAAGTTCCTTTGCAGATGAGGAGCTTGAATCAGAACCTGAGAATGACATGAAAAAGGATAGAAAGAATGGTGTGCCAATGCCACGTGATGCAGGTGCTAAGCCAACTGTTCCTGCTCTTTCTCAGCCTGAGGTTGAGATTGTTGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAACATCAACTTCAGATGCTACTCCTAAACAACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGCCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTGCTTGTTATTGATACCCCTGGGCACGAATCATTTACAAACTTACGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATCGAATCTCTTAATCTTTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTCGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACGGAACTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACTTGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACACCCCACCCAATGAAGGAACTCCGAGTGAAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTTTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCGTTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAGATTTTGCCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTCGATGTAATTGAAGGCATTGCCAAGGTTGGGACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAATTGGGCACTCTCCGGAGGAGCAGCAAAAGATGTACGGTAGGCATTTTGATTTGGAGGATGAACTTGTCAGTCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGATGATTTGTCCACGGAGGAGTGGAGACTGGTGGTGAAATTGAAGAACCTTTTCAAGATACAATGA | 3993 | 41.92 | MGRKKPTARDDDSAPAAAQGGGKSKKKAFAVDDDEYSIGTELSEEAPVQEEKVVVTGKKKGKKGNSKASQVKEEEDDDDGDGVSEIVITGKKKGKSKKGGNNSAFTASSFGLLEEEGEDGADDESVLTAEKDDDVGNDDSAIKFSGKKKSSKSSKSGFSAVSAFSSLDDEKDEDVIDNEIEVVEEIDDEPAIAFTGKKKPSKGSKKGGNAFSGFSGLDYEDEDRNDDKDEDEDATTISFSGKKKKSAKGSKKSGNSFSATFADGENDDDVSIPEPNKLDNDGVDEDDANVIAFSGKKKSSKKKSSSTFTALGDENALGNEIRDVVIPEILNTTSSNFDSDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGSTIPKPADPPLSSQEAKVENPPELVAPPEASAEKEAEDENTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEVIEPKKGTAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASAGGLPLSTSDPSAPAKRPKYQTKKSKPAHHQTNGSVQAKVVEHIEEKIQEKDVAETEIFESEKIEPFESMHVEEKSDVIEATEDNEIQEDEDEWDAKSWDDAAVDLFSKSSFADEELESEPENDMKKDRKNGVPMPRDAGAKPTVPALSQPEVEIVDKGKRKDDAVKKKTSTSDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIIGHSPEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTEEWRLVVKLKNLFKIQ | 1330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 91191931 | 91215427 | + | Tan0013819.2 | Tan01g3341 | 740765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3341 | 1330 | Gene3D | - | 1080 | 1186 | IPR036925 | - | |
Tan01g3341 | 1330 | Gene3D | Translation factors | 981 | 1079 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 681 | 755 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 413 | 432 | - | - | |
Tan01g3341 | 1330 | NCBIfam | small GTP-binding protein domain | 763 | 888 | IPR005225 | GO:0005525(InterPro) | |
Tan01g3341 | 1330 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 421 | 1329 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 453 | 566 | - | - | |
Tan01g3341 | 1330 | Pfam | Elongation factor Tu domain 4 | 1200 | 1273 | IPR029459 | - | |
Tan01g3341 | 1330 | Coils | Coil | 412 | 448 | - | - | |
Tan01g3341 | 1330 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1063 | 1192 | IPR036925 | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 626 | 651 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 1 | 320 | - | - | |
Tan01g3341 | 1330 | Pfam | Elongation factor Tu GTP binding domain | 761 | 970 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Tan01g3341 | 1330 | CDD | aeIF5B_II | 982 | 1072 | - | - | |
Tan01g3341 | 1330 | CDD | IF2_eIF5B | 761 | 971 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 685 | 709 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 170 | 188 | - | - | |
Tan01g3341 | 1330 | Gene3D | Translation factors | 1193 | 1330 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 333 | 610 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 333 | 349 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 363 | 378 | - | - | |
Tan01g3341 | 1330 | Pfam | Translation-initiation factor 2 | 1067 | 1179 | IPR023115 | - | |
Tan01g3341 | 1330 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 758 | 974 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Tan01g3341 | 1330 | FunFam | Eukaryotic translation initiation factor 5B | 752 | 980 | - | - | |
Tan01g3341 | 1330 | PRINTS | GTP-binding elongation factor signature | 762 | 775 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Tan01g3341 | 1330 | PRINTS | GTP-binding elongation factor signature | 826 | 836 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Tan01g3341 | 1330 | PRINTS | GTP-binding elongation factor signature | 878 | 887 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Tan01g3341 | 1330 | PRINTS | GTP-binding elongation factor signature | 842 | 853 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Tan01g3341 | 1330 | CDD | IF2_aeIF5B_IV | 1201 | 1296 | - | - | |
Tan01g3341 | 1330 | Gene3D | - | 752 | 980 | IPR027417 | - | |
Tan01g3341 | 1330 | FunFam | Eukaryotic translation initiation factor 5B | 1080 | 1186 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 130 | 146 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 270 | 284 | - | - | |
Tan01g3341 | 1330 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 753 | 1043 | IPR027417 | - | |
Tan01g3341 | 1330 | Coils | Coil | 1175 | 1195 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 115 | 129 | - | - | |
Tan01g3341 | 1330 | Coils | Coil | 482 | 549 | - | - | |
Tan01g3341 | 1330 | FunFam | Eukaryotic translation initiation factor 5B | 1193 | 1330 | - | - | |
Tan01g3341 | 1330 | MobiDBLite | consensus disorder prediction | 728 | 749 | - | - | |
Tan01g3341 | 1330 | SUPERFAMILY | Translation proteins | 1197 | 1329 | IPR009000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3341 | Tan-Chr1:91191931 | Tan01g4114 | Tan-Chr1:105988584 | 1.70E-28 | dispersed | |
Tan01g3340 | Tan-Chr1:91191931 | Tan01g3341 | Tan-Chr1:91191931 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3341 | K03243 | - | mdm:103425307 | 1461.05 |