Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3345 ATGCTGATGGACGCTAATTTCTCGGCGCCGAAACCACCGCAGACGGCGGCGATGGACATCGATCAGATGCCAGAGAATCCCCACCGTGGTTCCCACCACCGCCGCTCTCACTCCGACACTTCTTTCCGCTTCCCAAACCTCGACGAGCTTCTCTTCTTCGACCCTTTAGAGCTCGACCTCTCGATTCTCTCTTCCCCTTCTTCTCCCCCTCCCGGCGGCGCTGCCATGACCGTTGATTCGTCGTCTAATTCCAAGGTGTCCGACGACGCCGTGCGCCCTAAGCCGGAGCCGATTAACTCCGGACAGTTCGGCGGGCACTTGCGCAGCTTGTCGATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGCGGTGATAGTGGGGAGATCGATTCTTTGGGGAGGAAAACTCCAGTGAGTGAACAGCGTCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCATCGTCGTTTGAGGCTGATTCAACCCTAGTGATTGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCAGAGCTAGCCCTAATTGACCCAAAAAGAGCTAAAAGGATTCTTGCGAATAGACAATCAGCGGCTCGTTCTAAAGAGAGGAAGATACGGTACACGAATGAGTTGGAGAGGAAGGTTCAGACTCTGCAGTCTGAAGCTACCACTCTGTCTGCGCAGGTGACGATGCTGCAGAGAGATACTACTGGACTAACCGTGGAGAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAACAGCAAGCACAGCTTCGGGACGCTCTGAGCGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGCCAGGTTCCATCTATTAATGGAAATCCTTTCAACCGACCTCCTCAATATCCATCATCCCGGCCACCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCCGTCACCCATCTTGGCCACAAACCACCAGCAGCAATCAGATCCAAAATGGACGAACTCGTCCCAGCTTCTCGGTCGTAATCCCGATGGCCAAGCAAAACCTTAA 1062 52.82 MLMDANFSAPKPPQTAAMDIDQMPENPHRGSHHRRSHSDTSFRFPNLDELLFFDPLELDLSILSSPSSPPPGGAAMTVDSSSNSKVSDDAVRPKPEPINSGQFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTMLQRDTTGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPSINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQPSPILATNHQQQSDPKWTNSSQLLGRNPDGQAKP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 91842590 91845343 + Tan0021001.1 Tan01g3345 740769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3345 353 CDD bZIP_plant_RF2 189 238 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3345 353 MobiDBLite consensus disorder prediction 64 88 - -
Tan01g3345 353 Pfam Basic region leucine zipper 186 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3345 353 Gene3D - 188 239 - -
Tan01g3345 353 MobiDBLite consensus disorder prediction 303 346 - -
Tan01g3345 353 SUPERFAMILY Leucine zipper domain 188 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3345 353 MobiDBLite consensus disorder prediction 64 106 - -
Tan01g3345 353 MobiDBLite consensus disorder prediction 282 353 - -
Tan01g3345 353 MobiDBLite consensus disorder prediction 1 41 - -
Tan01g3345 353 Coils Coil 211 259 - -
Tan01g3345 353 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 331 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g3345 353 FunFam Transcription factor VIP1 187 240 - -
Tan01g3345 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3345 353 SMART brlzneu 184 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3345 353 MobiDBLite consensus disorder prediction 127 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3345 Tan-Chr1:91842590 Tan11g1147 Tan-Chr11:9086250 4.40E-93 dispersed
Tan01g3345 Tan-Chr1:91842590 Tan05g0914 Tan-Chr5:7367698 1.20E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26496 PF07716 bZIP_2 5.10E-08 CL0018 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3345 K20557 - csv:101207973 577.785