Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3345 | ATGCTGATGGACGCTAATTTCTCGGCGCCGAAACCACCGCAGACGGCGGCGATGGACATCGATCAGATGCCAGAGAATCCCCACCGTGGTTCCCACCACCGCCGCTCTCACTCCGACACTTCTTTCCGCTTCCCAAACCTCGACGAGCTTCTCTTCTTCGACCCTTTAGAGCTCGACCTCTCGATTCTCTCTTCCCCTTCTTCTCCCCCTCCCGGCGGCGCTGCCATGACCGTTGATTCGTCGTCTAATTCCAAGGTGTCCGACGACGCCGTGCGCCCTAAGCCGGAGCCGATTAACTCCGGACAGTTCGGCGGGCACTTGCGCAGCTTGTCGATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGCGGTGATAGTGGGGAGATCGATTCTTTGGGGAGGAAAACTCCAGTGAGTGAACAGCGTCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCATCGTCGTTTGAGGCTGATTCAACCCTAGTGATTGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCAGAGCTAGCCCTAATTGACCCAAAAAGAGCTAAAAGGATTCTTGCGAATAGACAATCAGCGGCTCGTTCTAAAGAGAGGAAGATACGGTACACGAATGAGTTGGAGAGGAAGGTTCAGACTCTGCAGTCTGAAGCTACCACTCTGTCTGCGCAGGTGACGATGCTGCAGAGAGATACTACTGGACTAACCGTGGAGAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAACAGCAAGCACAGCTTCGGGACGCTCTGAGCGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGCCAGGTTCCATCTATTAATGGAAATCCTTTCAACCGACCTCCTCAATATCCATCATCCCGGCCACCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCCGTCACCCATCTTGGCCACAAACCACCAGCAGCAATCAGATCCAAAATGGACGAACTCGTCCCAGCTTCTCGGTCGTAATCCCGATGGCCAAGCAAAACCTTAA | 1062 | 52.82 | MLMDANFSAPKPPQTAAMDIDQMPENPHRGSHHRRSHSDTSFRFPNLDELLFFDPLELDLSILSSPSSPPPGGAAMTVDSSSNSKVSDDAVRPKPEPINSGQFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTMLQRDTTGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPSINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQPSPILATNHQQQSDPKWTNSSQLLGRNPDGQAKP | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 91842590 | 91845343 | + | Tan0021001.1 | Tan01g3345 | 740769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3345 | 353 | CDD | bZIP_plant_RF2 | 189 | 238 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3345 | 353 | MobiDBLite | consensus disorder prediction | 64 | 88 | - | - | |
Tan01g3345 | 353 | Pfam | Basic region leucine zipper | 186 | 237 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3345 | 353 | Gene3D | - | 188 | 239 | - | - | |
Tan01g3345 | 353 | MobiDBLite | consensus disorder prediction | 303 | 346 | - | - | |
Tan01g3345 | 353 | SUPERFAMILY | Leucine zipper domain | 188 | 240 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3345 | 353 | MobiDBLite | consensus disorder prediction | 64 | 106 | - | - | |
Tan01g3345 | 353 | MobiDBLite | consensus disorder prediction | 282 | 353 | - | - | |
Tan01g3345 | 353 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Tan01g3345 | 353 | Coils | Coil | 211 | 259 | - | - | |
Tan01g3345 | 353 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 19 | 331 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan01g3345 | 353 | FunFam | Transcription factor VIP1 | 187 | 240 | - | - | |
Tan01g3345 | 353 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 186 | 249 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3345 | 353 | SMART | brlzneu | 184 | 248 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3345 | 353 | MobiDBLite | consensus disorder prediction | 127 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3345 | Tan-Chr1:91842590 | Tan11g1147 | Tan-Chr11:9086250 | 4.40E-93 | dispersed | |
Tan01g3345 | Tan-Chr1:91842590 | Tan05g0914 | Tan-Chr5:7367698 | 1.20E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26496 | PF07716 | bZIP_2 | 5.10E-08 | CL0018 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3345 | K20557 | - | csv:101207973 | 577.785 |