Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3354 ATGTCGTTAGTCGGGCCATCCGATCCATCTCTGTTGTCATATGGAAGTCGCAAACTTTACTCGTTGAAGGGAACCAAGAATGGTCCTGACTTGTCCACACAAAGATTTGGCTCCGAAAAGCATAGGACGATGTACATGAATGATTCATATTGCAGTGAGAGCTATGAGAAGTATTTCCTCGACTTCCCGATAGAAGAGCTATCAATTTCTGACATTACTACCGATTCTTTTCACCCCAACGCTGCTTTGTGTGGGCTAAGGGCTGATTCTCTATCCCCTTTGTGTGATTCATTTACACTTTTTGATACTTATCAATCAAACTCGGACTCAGCTTGCCTCGAGAGTACAAGTCCTGAACAGCTGGATTTTGAGGATGATCAAGTGAGACAGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGAACCCGATGCTGCTGATTATGACGATGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGATAGCGAGTGGGCAAATTCAATTCAAGATGCACTGCTTCATGACTCGCCGAAGGAATCGTCATCAACAGATTCTAATTTCAGTACCACCAGCAGCAATAAGGATGCATCTCAGATATCATCACAGAATCCCAGACAAATGCTTATAGAATGTGCTTCTGCTATCTCAGAAGAGAACCTTGATGAAGGGTCAGCCATGATAGAGCAGCTCCGGGGTATGGCCTCGGTTCAGGGAGATCCCTCACAGAGGATTGCAGCGTATATGGTGGAAGGTCTTGCTGCTCGGTTGTTGGAATCGGGAAAATGTCTTTATAAAGCTCTGAGATGCAAAGAGCCCCCTTCCTCTGACCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTTGGTTTTATGGCTGCAAATTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTTGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCAGCTCAGCCAGGTAGGCCACCACACTTGAGGTTAACTGGTGTTGATGACCCCGAATCAGTACAGCGCCCTGTTGGAGGTCTTAGACACATTGGACAAAGGCTCGAGCAGCTGGCAAAAGCACTGCGGGTTCCATTTGAATTTCGCGCAATTGCCTCAAATGCTTCAGATGTCACTCCCTCAATGCTTGCCTCCCGGCCTGGAGAAGCACTCATAGTAAACTTCGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTTCGAATGGTTAAGAGCCTGAACCCAAAACTGGTAACAGTCGTCGAGCAGGACATGAACGCAAATACCACCCCATTCTTTTCAAGATTCGTCGAAACCTATAACTACTACGCAGCTGTTTACGATTCTCTCGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGGCAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTTGAGAGATACGAGGTTGCTGGGAAATGGCGGGCAAGAATGACAATGGCTGGCTTCACTTCTTGTTCGATGAGCCAAAACGTGACCAACCCGATCCGTAAACTTATTATCGAGGAGTATTGCGACAGATTCAAGATGTATGAAGAAATGGGCACACTCCATTTTGGATGGGAAGAGAAAAGCTTGATAGTTACTTCAGCATGGAGGTAA 1731 45.41 MSLVGPSDPSLLSYGSRKLYSLKGTKNGPDLSTQRFGSEKHRTMYMNDSYCSESYEKYFLDFPIEELSISDITTDSFHPNAALCGLRADSLSPLCDSFTLFDTYQSNSDSACLESTSPEQLDFEDDQVRQKLQELERDLLGEPDAADYDDEMFANGQSMEIDSEWANSIQDALLHDSPKESSSTDSNFSTTSSNKDASQISSQNPRQMLIECASAISEENLDEGSAMIEQLRGMASVQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGRPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFRAIASNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNANTTPFFSRFVETYNYYAAVYDSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTNPIRKLIIEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 92809387 92813150 + Tan0020125.1 Tan01g3354 740778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3354 576 Pfam GRAS domain family 206 576 IPR005202 -
Tan01g3354 576 MobiDBLite consensus disorder prediction 176 203 - -
Tan01g3354 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 189 575 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan01g3354 576 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2424 Tan-Chr1:30166427 Tan01g3354 Tan-Chr1:92809387 2.60E-57 dispersed
Tan01g3354 Tan-Chr1:92809387 Tan05g0965 Tan-Chr5:7949260 1.70E-118 dispersed
Tan01g3354 Tan-Chr1:92809387 Tan01g3355 Tan-Chr1:92809387 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26497 PF03514 GRAS 3.20E-130 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3354 K27748 - csv:101206511 1038.1