Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3372 ATGGTTGGTTGTAAAATGATTAAGGTTGTTATGGTACTGGCTTCAATGGTTGTAATGGTGCCAAGTCTCAAAGCTGGGATTGCTGAGTTTGATGAGTTTTTGGTGCAAAAGGCTGATGAAGCGAAAGAAGCTTCTGTTGAAGCGTTCGAGTCTGAGCCCATGAATGTGACTGAGCATTTGAATTATGAAGTTCATTTAGCTTTAGAGGGAGTGAATAGCAGTAGGAGAATCCTGGGGAAAAACAACGGCCCGTGCATGGCCGCCAACCCAATCGACCGCTGCTGGCGATGCGACCCAAACTGGGCAAAGAACCGTAAGAAGCTTGCCTCTTGCGTGTTGGGTTTTGGTCGAAAAACAAGCGGTGGAGAAAAAGGAGAATTTTACACAGTGACAGACCCATCCGACAACGACGTCGTAAACCCAAAACCCGGAACCCTCCGACATGCGGCAATTCAAAAACAACCGCTATGGATCATATTTGGTCGTAGCATGATCATCAAACTAACAAAAGAGTTATTGGTGGGAAGTCACAAGACAATCGACGCACGCGGTGCGAATGTACACATTGCCGGTGGCGCTGGACTTACCATTCAATTCTCCCAAAACGTGATAATTCACGGCCTTCACATCCACGACATTGTGACAACCACCGGTGGGTTGATCCGAGATGGGTTCGACCATATAGGAATTCGAACGGTGAGTGACGGAGACGGCGTCTCCATCTTCGGATCCTCCAACATTTGGCTGGATCACTTGTCCATGTCCAGATGTCAAGATGGACTCATCGACGCAATCCAAGGTTCGACAGCAATCACAATCTCAAACTCTCATTTCACTCATCATAACGACGTGATGTTATTCGGTGCGAGTGATTCATATCAAGGTGATTCCATAATGCAAGTCACAGTGGCATTCAACCATTTCGGTAAGGGATTGGTGCAGAGAATGCCAAGATGTCGATGGGGTTTCTTTCATGTTGTCAATAATGATTACACTCATTGGCTGATGTACGCCATTGGTGGGAGCATGCATCCCACAATTATTAGTCAAGGGAATCGTTTTATTGCACCACCAAACCCTGCTGCTAGACAGATTACAAACAGAAATTATGCGACAGAGAGTGTGTGGAAAACATGGACATGGAGATCAGAAGGGGATCTCATGATGAATGGAGCTTATTTTGTTCAGTCTGGGAATCCAACCAAACAAAGGCCATACAGCAGGTTTGACATGATTAAGGCTAAGCCTGGCACTTTTGTTACAAGGCTTACACGCTTTTCTGGTGCACTCAATTGTTATGTTGGTCGACCATGCTAA 1317 45.94 MVGCKMIKVVMVLASMVVMVPSLKAGIAEFDEFLVQKADEAKEASVEAFESEPMNVTEHLNYEVHLALEGVNSSRRILGKNNGPCMAANPIDRCWRCDPNWAKNRKKLASCVLGFGRKTSGGEKGEFYTVTDPSDNDVVNPKPGTLRHAAIQKQPLWIIFGRSMIIKLTKELLVGSHKTIDARGANVHIAGGAGLTIQFSQNVIIHGLHIHDIVTTTGGLIRDGFDHIGIRTVSDGDGVSIFGSSNIWLDHLSMSRCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSMHPTIISQGNRFIAPPNPAARQITNRNYATESVWKTWTWRSEGDLMMNGAYFVQSGNPTKQRPYSRFDMIKAKPGTFVTRLTRFSGALNCYVGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 94151149 94152511 - Tan0018177.1 Tan01g3372 740796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3372 438 Pfam Pectate lyase 173 354 IPR002022 -
Tan01g3372 438 Gene3D - 88 431 IPR012334 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Tan01g3372 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Tan01g3372 438 SUPERFAMILY Pectin lyase-like 89 429 IPR011050 -
Tan01g3372 438 SMART amb_all 163 360 IPR002022 -
Tan01g3372 438 PANTHER PECTATE LYASE 18-RELATED 16 435 IPR045032 GO:0030570(InterPro)
Tan01g3372 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3372 Tan-Chr1:94151149 Tan07g1262 Tan-Chr7:56607071 1.10E-231 dispersed
Tan01g3372 Tan-Chr1:94151149 Tan04g1114 Tan-Chr4:10207175 1.20E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3372 K01728 - csv:101202789 777.704