Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3380 ATGGTTGATATTTGTCAGAAATGTGGAGACAGAGGTTTTGTTGAGGCTTTAAATTATTGTAAACAATGTCAGACTTATCCTGTCCATCGCTATTGCTTAGATGCATTGCCAAAAACTTTTGATGAGTATGTTAGTTGGTTTTGTGAAGATTGTGAGGCAATAATGGCGCCAATAATAAAATCTGATGTTAAATTGAAAAAGAAAAAGCTTGTCAGACGATCGAAGAAGAAAAAGAAGAAAAAGGTGAAAACGAAGGGGAATGATGATAAAGGTCAAAGTAGTTCTCCTCCTCAATTACCTGAGGCACATTGCAGTGAAAAGAAGAATGATACAACGCCTGGAGGGCTGGGAGAGCAAGTTCGAGAAGGTGGGGCCAATCATGGTGAAGTCGCTACATCATCTGATACACCCAATTTCTTAGGGCACAACTGTTATGTTGCACAGCCTATAGTAGATCCGGTCTGGAGGGGAACCTTAAAATTTTGGAACAAAAGTTTTGCCAGAGTTTGTGTACTTGTTGCCCATATGTCTAGCTTAGCATGCTCAAAAGTGTATGAGGAGGCAAAATCATTACCTGAGTTACTTCCCGTTGAATTACTTCGTAGATGTGAAGTATGGCCTAAAGGATTTGAGAAATTGGGGCCAACTGATCAAAGTATTGCTCTTTATTTCTTTCCAGAAGGGGAAAGAAGCCAAAAGGCATTTGATCTTCTGGTCAATGCAATGATGTGCAAGGACCTAGCCGTGAAGGCTGTGCTGAAAAATGCTGAGCTATTAGTTTTTACTTCGTCCATGTTACCAATGCGATACTGGAGATTTCAAAGTAAGTACTATTTGTGGGGCGTCTTTCGTGGAAAGCAAGTTTCACAACCGAGAAATAATGTGGCTTCTGAGGAGAGAACTTCTGCTGAGTCATTACCTTGTATGCAAAGCCCCATTAGTCCTATAAGTCCTTTAAGCAACACTACTTCATTCTAG 978 40.39 MVDICQKCGDRGFVEALNYCKQCQTYPVHRYCLDALPKTFDEYVSWFCEDCEAIMAPIIKSDVKLKKKKLVRRSKKKKKKKVKTKGNDDKGQSSSPPQLPEAHCSEKKNDTTPGGLGEQVREGGANHGEVATSSDTPNFLGHNCYVAQPIVDPVWRGTLKFWNKSFARVCVLVAHMSSLACSKVYEEAKSLPELLPVELLRRCEVWPKGFEKLGPTDQSIALYFFPEGERSQKAFDLLVNAMMCKDLAVKAVLKNAELLVFTSSMLPMRYWRFQSKYYLWGVFRGKQVSQPRNNVASEERTSAESLPCMQSPISPISPLSNTTSF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 95345045 95362675 - Tan0020142.1 Tan01g3380 740804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3380 325 SUPERFAMILY FYVE/PHD zinc finger 3 56 IPR011011 -
Tan01g3380 325 MobiDBLite consensus disorder prediction 70 134 - -
Tan01g3380 325 PANTHER RING_FYVE_PHD ZINC FINGER SUPERFAMILY PROTEIN 1 98 IPR049914 GO:0034244(InterPro)|GO:0140566(InterPro)
Tan01g3380 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 54 IPR013083 -
Tan01g3380 325 MobiDBLite consensus disorder prediction 291 325 - -
Tan01g3380 325 MobiDBLite consensus disorder prediction 70 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3380 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3380 Tan-Chr1:95345045 Tan01g3383 Tan-Chr1:95345045 3.70E-179 dispersed
Tan01g3380 Tan-Chr1:95345045 Tan01g3381 Tan-Chr1:95345045 7.50E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1242 . . . . . . . . . . Cma01g00990 . Car01g00881 . . Cpe06g00895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g1573 Cmo01g01027 . . . . Car09g00993 . . Bhi09g01502 Tan01g3380 Cmetu01g2157 . . . . Cla09g00923 Cam09g0975 Cec09g0980 Cco09g0986 . . Cre09g0944 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005025 1 2 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 0 0 1 1 1 1 11 1 39