Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3426 ATGGAGGAGACAGAGGGAGTTGATTTTGGGTTTGCTGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAACAGATAGCGAGCCGGCGGAGGCGGCCACAGCGGAAGTGGGTCTGACGCCGGCGGCGGCTACAAATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGACCCGATGGGACTGTAGCGCCAACATTGTCGCCAATGCCGATTTCATCGTCAATTCCGCTGACCGGAGAGTTTCCCGGTTGGAAACGGGGAAGAGGGCGATCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGAATATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTTACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATGTCGGGCAATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGACAGTCAACATCTTCTGGGGGTACTCTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCGTATATGCCTTCTGAGATTGGTGGAACAAAAAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGTGGAGGACTTGCTGGCATGCTGATCGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCTTACCACCAGGTCTCCAGGAGGAAAATAAACCAAAGAAGAGTAGGATGGAACCTACATCAAATGCAGTTTCACCTCCAGCCATGAAGCCCATAGTCACATCCACTCTGATAGGAGATAAAGCAGCTTCTTTAGACCCAACTCCAGCTTTTAGAATTCCACCAGTCAATGAAAAATCACCTTTTCCAGATGAATCAAGAGGTGTCTTCCACCATTCAAACCATGAGGTTTCTTGTTGA 963 48.08 MEETEGVDFGFAVKVSQAPESFGMMDSRPENTTDSEPAEAATAEVGLTPAAATNGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGCRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGLQEENKPKKSRMEPTSNAVSPPAMKPIVTSTLIGDKAASLDPTPAFRIPPVNEKSPFPDESRGVFHHSNHEVSC 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 98340217 98345793 - Tan0002038.1 Tan01g3426 740850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3426 320 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 255 - -
Tan01g3426 320 MobiDBLite consensus disorder prediction 247 270 - -
Tan01g3426 320 CDD DUF296 128 242 IPR005175 -
Tan01g3426 320 MobiDBLite consensus disorder prediction 305 320 - -
Tan01g3426 320 MobiDBLite consensus disorder prediction 286 320 - -
Tan01g3426 320 Gene3D - 129 259 - -
Tan01g3426 320 ProSiteProfiles PPC domain profile profile. 124 263 IPR005175 -
Tan01g3426 320 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 265 IPR039605 GO:0003680(InterPro)
Tan01g3426 320 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Tan01g3426 320 MobiDBLite consensus disorder prediction 18 80 - -
Tan01g3426 320 FunFam AT-hook motif nuclear-localized protein 1-like 129 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0351 Tan-Chr1:3025882 Tan01g3426 Tan-Chr1:98340217 9.40E-83 dispersed
Tan01g0352 Tan-Chr1:3025882 Tan01g3426 Tan-Chr1:98340217 9.40E-83 dispersed
Tan01g3426 Tan-Chr1:98340217 Tan07g1762 Tan-Chr7:69191597 7.10E-74 dispersed
Tan01g3423 Tan-Chr1:98251196 Tan01g3426 Tan-Chr1:98340217 1.50E-107 proximal
Tan01g3426 Tan-Chr1:98340217 Tan01g3427 Tan-Chr1:98340217 4.80E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3426 - - - 0.0