Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3463 ATGATGGATGTGAACGGGAATAAACCTTCGAAACCTGTTCGAAGAAGTTCGTCTCAGAAGGAAAGTGAAAATGGAAGCCAAGTAGTTGTGGAAATTAGCAGCGTTGTGTCTTCCAAAGAAACCAGAGATGAAAATGGCTACTCAATACCGAAGCAAAACAGAGTTGATTCACAAACCAAAGAGCCGATGGATTCGAGCATTGGCTATGGCTACGATTCACATCCCGCTCCGACTGTGAATAAGCCCCCGAAAATCCCCAGTTCAATTGGAACCCTCAAGCCTAGAAAATCTCTTAAAAGATCAATCCTCTCGAAAACCAAATCCAGATTTGGGGAACAGCCATATTACATCGATTCAGATATGCTTGAGGAGAATCATTTGTCATTGAGAGATCAAATTGGTGCAACTTCGTCCAGACGCTCCACTCTTAACACGGCGAAGGAACAACCTGAAGAAGAAGATGATGAGGAAATCTACAAGACAGAACAGTTGAACAAAGAGAGGCATAAGAAAGTGAAGGTAAAGACATTGATTAAGTGGGTTGGATTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTGACCGTTTGAAGAATTGCTTCCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTGCTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATCGGTTTATGAATGTGATTGTGTTTTTGATTGAGAGGAACTTTTTGCTTAGGAAAAAAGTGTTTTATTTTGTTCATGGGTTGAAAAAAAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGTGTTGTTGTTCGATCGGAATAGTCATAGGATCTTGAGATCGAGGACCACTCAGAAGATTTTGGATGCTGTTACATGGACTCTGGTAACCCTTCTAATAGGGGCATTTTTGTGGTTGATAAAGACATTGTTGCTGAAAATACTGGCGTCCAAGTTTCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAGACCCTCTTGAGCCCTTCGATGATTGGTATGGCTGAAGAGTCCAGCAGTGGTCGATTGACTTTGAAGGGTAAAAAATCAGACCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTCGATGCAGTTACAAGTTCGGAGATGTCGATCTCACAACTACTCGATGAAAGCTACCAGAATGTTGCTGATGGAGAGATCGCCGATGAGATGGAAGTTGCCAGAAATGCTGCCTACATGATCTTCAACAATATTGCTCTTCCTGGAAACAGGTTCATAGAGGAAGAGGATCTTCTGAAAGTCATGATCAAAGAAGAAATTGATCTTGTGTTACCACTCTTTGAGGTAGATGAGATGAGGAGGATTGACAGGAAAGCTCTAACAAATTGGGTGATGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCTTGAAAGACACCAAAACTGCTGTGAAGCAACTGAATAATTTAGTAACAGCGCTTCTTATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTTCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACACTTGCAAGACTATATTCGAAGCTCTAATCTTCGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTTCTGTCGATGGTGTCCCGTTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCACCAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGTCCATCACTAATTACTACAGAAGTCCAGACATGTGCGACACCATAGAATTCTCGATCGGTTTCACAACGCCACTGGAGAGGATTGGGGTCATGAAAGAGAGAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGAAGGAGATTGAAGACGTGAATAAGATAAAGATCGCTCTTTATGCAAACCACACCATGAATTTTCAAGATTGGGTCGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAAAATTTTCGAAGAACTGAAGATCAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCTGTGGAAGGGCACTGA 2205 41.5 MMDVNGNKPSKPVRRSSSQKESENGSQVVVEISSVVSSKETRDENGYSIPKQNRVDSQTKEPMDSSIGYGYDSHPAPTVNKPPKIPSSIGTLKPRKSLKRSILSKTKSRFGEQPYYIDSDMLEENHLSLRDQIGATSSRRSTLNTAKEQPEEEDDEEIYKTEQLNKERHKKVKVKTLIKWVGFFCIIGCLVASLTVDRLKNCFLWGLKVWKWCLLATVILCGMIFTHRFMNVIVFLIERNFLLRKKVFYFVHGLKKSVQVTLWLTLVLVTWVLLFDRNSHRILRSRTTQKILDAVTWTLVTLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLLSPSMIGMAEESSSGRLTLKGKKSDHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQLLDESYQNVADGEIADEMEVARNAAYMIFNNIALPGNRFIEEEDLLKVMIKEEIDLVLPLFEVDEMRRIDRKALTNWVMKVYQERKTLAHALKDTKTAVKQLNNLVTALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCSVDGVPLLVEEMNILTTVFLKLTNEKVYYPNSVLATKSITNYYRSPDMCDTIEFSIGFTTPLERIGVMKERIKRYLEKNPQHWHPNHSVVVKEIEDVNKIKIALYANHTMNFQDWVEKNRRRTELVMELKKIFEELKINYNLLPQTVHLFPVEGH 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 99949559 99952966 + Tan0022834.1 Tan01g3463 740887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3463 734 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 728 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Tan01g3463 734 FunFam Predicted mechanosensitive ion channel 572 621 - -
Tan01g3463 734 PIRSF Memb_At2g17000 3 732 IPR016688 -
Tan01g3463 734 SUPERFAMILY Sm-like ribonucleoproteins 562 621 IPR010920 -
Tan01g3463 734 MobiDBLite consensus disorder prediction 136 158 - -
Tan01g3463 734 Pfam Mechanosensitive ion channel, beta-domain 565 622 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g3463 734 MobiDBLite consensus disorder prediction 19 43 - -
Tan01g3463 734 MobiDBLite consensus disorder prediction 50 64 - -
Tan01g3463 734 Gene3D - 572 621 IPR023408 -
Tan01g3463 734 MobiDBLite consensus disorder prediction 1 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3463 K22048 - - csv:101217197 1057.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3463 Tan-Chr1:99949559 Tan09g1102 Tan-Chr9:63336187 5.10E-184 dispersed
Tan01g3463 Tan-Chr1:99949559 Tan05g1092 Tan-Chr5:9643270 9.40E-130 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan11g2174 . 1 503 Mechanosensitive Ion Channel Family AT4G00290 50.6 4.7e-133 472.2
Tan01g1484 . 58 725 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.8e-196 683.3
Tan02g2481 . 10 705 Mechanosensitive Ion Channel Family AT5G10490 55.8 4.9e-194 675.2
Tan02g2481 . 10 685 Mechanosensitive Ion Channel Family AT1G58200 57.8 7.5e-198 688.0
Tan01g1484 . 49 695 Mechanosensitive Ion Channel Family AT1G58200 53.0 5.7e-174 608.6
Tan05g1092 . 45 934 Mechanosensitive Ion Channel Family AT1G53470 56.7 3.3e-270 928.7
Tan02g0642 . 83 943 Mechanosensitive Ion Channel Family AT1G53470 50.8 4.2e-233 805.4
Tan05g1093 . 45 676 Mechanosensitive Ion Channel Family AT1G53470 51.9 8.0e-160 562.0
Tan05g1092 . 45 929 Mechanosensitive Ion Channel Family AT3G14810 53.8 2.8e-250 862.4
Tan05g1092 . 49 934 Mechanosensitive Ion Channel Family AT1G78610 59.9 2.4e-286 982.2
Tan02g0642 . 61 941 Mechanosensitive Ion Channel Family AT1G78610 56.8 6.8e-265 911.0
Tan05g1093 . 49 676 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.2e-173 607.8
Tan05g1092 . 224 930 Mechanosensitive Ion Channel Family AT2G17000 61.5 2.2e-239 826.2
Tan02g0642 . 271 944 Mechanosensitive Ion Channel Family AT2G17000 59.2 1.7e-220 763.5
Tan05g1093 . 224 676 Mechanosensitive Ion Channel Family AT2G17000 58.3 3.5e-136 483.4
Tan09g1102 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 3.3e-199 692.6
Tan01g3463 . 80 728 Mechanosensitive Ion Channel Family AT5G12080 55.8 3.5e-193 672.5
Tan09g1099 . 67 720 Mechanosensitive Ion Channel Family AT5G12080 51.1 3.1e-165 579.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57