Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3471 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGACGAAGACCAAAGGGAAGAGGAACTGAAGATTGGTGAAATGAAACCCATGGCCATGCGTGAGGATGGTTTTGAGAACCCCGATGACTCTGATCGCATTGTGCGAAATGGGGATGATTCTGAAGGGACTGACCCACTTGCGATTGTTGTTGACGAGCCGGACTGCCACGACGGTGATCGACTGAGACTGTTTGAGGATATGGTTAGAGCAATGCAAGACGACGGCGATGGTGGTGCTCATTGGAACGATGGCGCCGGCGCCGGCGGTGGTGGTCGGGCTGTCAATTCTTGGAATTCTTCTTTTGGGATTCTCCGTCAGTCTGAGGGAGGGGAGAGTAGTAGTGCCTCGGCTTTGGCCTTATCTTCTACAGTGGAGACTTCTAATGAAGAGCGCGATCGCGATGCCCACCATAAGCGCGCTAAAGTTCACTCCAAATTCAATGAGTGCTCCTTTGCAACTTCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGATTATGACTTTAGTCATGGATCATCTTCAATTATGACTAGGAGTGAATTTTTCTATCATGCTTCTTCACTGAACAGAGTTGATGACAATGGAGATTTTGAATCTACTTTTGGCAAAGACGATGAGATAAATGAGAATGGGATTTGTACATCAGAGGGATCTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATGAATCTTTGTCAAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAGTTTGAGGATATGTGTGGACGGTATCCAAATGCCACAGAGGTAAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACCTTTTTCCATGCCCTGGCTGATTGCCAATTGTTGAAGAGCTTGACCATCAATGATTCTACGCTAGTTAATGTTACTCAAGAGATACCTATAAGCCACGATAGACTGCGTCATCTTCATCTTACTAAATGCCGTGTTATACGTATATCTGTTAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGTAGCAACATGGCGCAGGCTGTTCTTAATTGCCCTCTTCTTCATGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCGATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTGCTACAACCTGCCCGAATCTCCAGCTTCTGAATGCATCGTACTGCCCTAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTAAAGCTTCACAGCTGTGAGGGCATCACATCAGCGTCCATGACCGCAATATCTAGTTGTTCTAGGTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTCTTGACTTCTGTGTCTTTGGATCTCCCACGTTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCTCTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACGGACTGTGAATCTCTAACAAATTCTATTTGTGAGGTTTTTAGTGATGATGGTGGATGCCCTATGTTGAAATCACTCGTTCTTGATAACTGCGAGAGTTTGACAGCTGTTCGATTCTGTAGCAGATCTTTAGGAAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAAGTTTCTCTAGATGGTTGTGATCATCTCGAAAGAGCATCCTTTTCCCCTGTTGGTCTGCGGTCACTAAACCTGGGAATTTGTCCCAAACTGAATGAATTAAGACTTGAGGCCCCTCGTATGGATTTACTTGAGTTGAAAGGCTGTGGTGGATTGTCTGAGGCAGCCATCAATTGTCCTCGTCTAACATCATTGGATGCTTCCTTTTGTTGCCTACTGAAAGACGAGTGTTTGTCTGCAACAACTGCCTCATGTCCACAGATTGAATCATTAATACTGATGTCATGTCCTTCGGTTGGTTCAGAGGGACTTTACTCTCTGCAATGTCTTCCAAAGTTGGTTCTGCTTGATTTATCGTATACCTTTTTGATGAGCTTGCAGCCTGTTTTTGAGTCTTGTGTTCAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAGCCTCTTTACAAGGAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGACTTGTCTTACGGGACACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACACTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGATTGTAGCATTGGACAACTTTCTTTGTCCGGCATCCCCCTTTCTCTTGGTCAGGCCACTTTTGATGATATTGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAATCTTAACTGTGTAGGTTGTCAAAATATTAGGAAGGTTCTCATTCCTCCAGCCGCACGTTGTTTTCATTTATCATCATTAAACCTATCTCTGTCTGCAAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGTAATTGTTGCTCTCTGGAAGTTTTGAAACTCGACTGCCCGAGGCTGACCAGTCTCTTTCTCCAGTCTTGCAACATTGAGGAAGAAGCAGTTGAAGCTGCGATATCGAAATGTAGCATGCTCGAGACATTAGATGTCCGCTTTTGTCCAAAGATCTCGTCGATTAGCATGGTCCAACTGCGTATTGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCACCAACATGA 3099 43.76 MTIWCCLCFTVGDEDQREEELKIGEMKPMAMREDGFENPDDSDRIVRNGDDSEGTDPLAIVVDEPDCHDGDRLRLFEDMVRAMQDDGDGGAHWNDGAGAGGGGRAVNSWNSSFGILRQSEGGESSSASALALSSTVETSNEERDRDAHHKRAKVHSKFNECSFATSWPLGAGNPMRDYDFSHGSSSIMTRSEFFYHASSLNRVDDNGDFESTFGKDDEINENGICTSEGSEVRMDLTDDLLHMVFSFLDHMNLCQAAIVCRQWRAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRNLEVLTLGRGQLGDTFFHALADCQLLKSLTINDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLHDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIATTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSCSRLKVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDDGGCPMLKSLVLDNCESLTAVRFCSRSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCCLLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLQCLPKLVLLDLSYTFLMSLQPVFESCVQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWDCSIGQLSLSGIPLSLGQATFDDIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSANLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEAVEAAISKCSMLETLDVRFCPKISSISMVQLRIACPSLKRIFSSLSPT 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 99997410 100007267 + Tan0006874.1 Tan01g3471 740895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3471 1032 Gene3D Ribonuclease Inhibitor 791 1031 IPR032675 -
Tan01g3471 1032 Gene3D - 234 272 - -
Tan01g3471 1032 MobiDBLite consensus disorder prediction 117 151 - -
Tan01g3471 1032 Pfam F-box-like 238 278 IPR001810 GO:0005515(InterPro)
Tan01g3471 1032 FunFam F-box/LRR-repeat protein 15 isoform C 886 1028 - -
Tan01g3471 1032 CDD F-box_FBXO41 238 274 - -
Tan01g3471 1032 PANTHER OS10G0396666 PROTEIN 223 1026 - -
Tan01g3471 1032 Gene3D Ribonuclease Inhibitor 552 700 IPR032675 -
Tan01g3471 1032 Gene3D Ribonuclease Inhibitor 402 551 IPR032675 -
Tan01g3471 1032 SUPERFAMILY L domain-like 336 737 - -
Tan01g3471 1032 FunFam F-box/LRR-repeat protein 15 228 478 - -
Tan01g3471 1032 Gene3D Ribonuclease Inhibitor 273 401 IPR032675 -
Tan01g3471 1032 SUPERFAMILY F-box domain 234 284 IPR036047 GO:0005515(InterPro)
Tan01g3471 1032 Gene3D Ribonuclease Inhibitor 705 790 IPR032675 -
Tan01g3471 1032 MobiDBLite consensus disorder prediction 32 58 - -
Tan01g3471 1032 FunFam F-box/LRR-repeat protein 15 790 875 - -
Tan01g3471 1032 MobiDBLite consensus disorder prediction 117 137 - -
Tan01g3471 1032 MobiDBLite consensus disorder prediction 32 51 - -
Tan01g3471 1032 SMART fbox_2 236 276 IPR001810 GO:0005515(InterPro)
Tan01g3471 1032 SMART LRR_CC_2 408 433 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 749 774 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 590 614 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 993 1018 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 618 656 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 723 748 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 434 459 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 797 822 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 968 992 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 660 690 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 527 552 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 850 879 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 481 506 IPR006553 -
Tan01g3471 1032 SMART LRR_CC_2 460 480 IPR006553 -
Tan01g3471 1032 SUPERFAMILY L domain-like 716 1026 - -
Tan01g3471 1032 ProSiteProfiles F-box domain profile. 230 276 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3471 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42