Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3472 ATGGCGACCAAGATTCTGTGGTGTCTCTTGTTTTGTGCCCTGTTCGTCTCTGTGTTTTCTGCTGCAGATTCAAATGTGACTGATAACCCTGCTGATAAACTAGTAGTTGTGCTTAACAAGAACAGAACTGCTCACAAATTGCCTGCTCTTAAAGACAATCCTGGCTTGGCCTGCCTTGCCCTTCAGTATATAAAGGCATACCAAGGGAAATGTGGAGTGGTCGGAGGTCCCGACGGAATGAAGCCTCCGAATTCTGCGTTTGCTGAAACCTTTGCTCCCAAGTGTGGAGTAGTTGTCTCGTCTCTCGCTCCGATCACGGGACGGTTGCTTGGTTGCCAGACTAAATATGTACATGCTCCTGAAGCATTTTCTGATGTGTTGATGCTGAATAACAAGAGCTTGGAGATTCTCTACTACAAGAATCACATAGAAGTTGGAGCTGCTGTGACTGGCACAGATGGAGGCTCTCCTTACTTTTGGTGTGTGTTGTTCAGCAATGGCAGCCTCTCTAACAGCTTTGCTTTCGAGGGAGGAGTTGCGAAGTTAACACGCCCCGGTTGCTACAGTGGGGCTAATGACCAATGCAGTGGAGCCGATAGCGAGTTTTCGACCACTCGTACATTGCTATTAGCCTTGATATCTTTGGTTGCTGTGACATATGCCTTTGGTTTATGA 675 47.26 MATKILWCLLFCALFVSVFSAADSNVTDNPADKLVVVLNKNRTAHKLPALKDNPGLACLALQYIKAYQGKCGVVGGPDGMKPPNSAFAETFAPKCGVVVSSLAPITGRLLGCQTKYVHAPEAFSDVLMLNNKSLEILYYKNHIEVGAAVTGTDGGSPYFWCVLFSNGSLSNSFAFEGGVAKLTRPGCYSGANDQCSGADSEFSTTRTLLLALISLVAVTYAFGL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100008259 100009421 + Tan0020388.1 Tan01g3472 740896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3472 224 SUPERFAMILY PR-1-like 27 179 IPR035940 -
Tan01g3472 224 PANTHER OS08G0459300 PROTEIN 6 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3472 Tan-Chr1:100008259 Tan06g2238 Tan-Chr6:73137482 1.60E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014132 1 1 1 0 1 0 1 0 0 1 1 1 0 0 1 1 0 2 0 1 1 1 0 1 1 1 1 2 1 1 23