Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3475 ATGAAGTCTGTGAAGAAGGCAGCCATGGCATTTCCTGTTGAGCTTGTTGTTCTGGTTTTTCTCTTCTGTGCTACCATTGCTGTGGTGGATTCTGATGATGGAGCTACGTTGTTGGACATCAAGAAATCATTTAGGGATGTGGATAATGTTCTATATGATTGGACAAGCTCACCTTCTTCAGACTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTCTCTCTCTTAATCTTTCGGGTCTCAATCTGGACGGGGAAATTTCTCCTTCGGTTGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGTAATAGGCTTTCTGGGCAAATTCCAGATGAGATTGGTGATTGCTCTTCGTTAATAAATTTGGATTTATCGTTTAATGAGATTTATGGAGACATACCGTTTTCCATTTCGAAGTTGAAGCAACTTGGAATGCTAGTTCTGAAAAATAATCGGCTTATTGGACCGATCCCGTCAACCTTATCCCAGGTTCCGAACTTGAAGGTCTTAGATCTGGCACAGAATAATCTCAGCGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTCTGCGCGGCAACAATTTGGTAGGCACACTCTCTCCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACTGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCGTTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGTTATCAGGTCCCATTCCACCAGTAATAGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGCTGCAACATGTTATCTGGTCCAATCCCCTCTATCTTGGGGAATCTGACTTACACTGAGAAACTGTACTTGCACAGTAACAAGCTCACTGGATCCATTCCGGCCGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGGAAACTCACGGATCTGTTTGATCTAAATGTTGCTAATAACAACCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCGCCGTCTTTCCAGAGGCTGGAGAGTATGACTTACTTGAATCTCTCCTCAAACGATCTACGAGGTCCGATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCGAATAACAAAATTAGTGGCACAATTTCCTCGTCCTTCGGCGATCTGGAACATCTTCTAAAGCTAAATTTAAGCAGGAACCATTTAATGGGAATTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGCTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGCTCTCCTTGAGACTCGAAAACAACAATTTATCTGGGGATGTGACGTCGCTGATTAACTGCTTAAGTCTTACTGAATTAAACGTATCTTATAACAGTCTAGCTGGTGACATTCCCACAAGCAACAACTTCTCTAGGTTTTCATCTGACAGTTTCCTTGGAAATGTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAAGTTCGTACGACAGAGCGAGTGACAATATCTAAAGCCGCTATCTTGGGAATTGCTCTTGGTGCTCTAGTTATTCTTCTAATGATTCTCCTAACGGTGTGCCGTCCAAACAACACAATACCTTTCCCAGATGGATCACTTGATAAACCAGTTACCTACTCAACTCCCAAGCTAGTGATCCTTCACATGAACATGGCACTTCACGTGTATGAGGATATTATGAGGATGACCGAAAATCTGAGCGAAAAGTACATAATCGGACATGGAGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAATTGCAAACCTGTGGCTATCAAAAAGCTTTACTCTCACCAGCCCCTAAGCATGAAGGCATTCGAGACCGAACTTGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTCAGCCTCCAAGGATACTCCTTGTCCCCCTCTGGAAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGACCATCTACATGGCTCTAGCTCTACCAAGAAGAAAAAACTTGACTGGGACACTCGGCTTAATATTGCACATGGAGCAGCTCAAGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGCATCGCCAAGAGTTTATGCACCTCGAAGACTTATACATCCACTTATATCATGGGAACCATTGGATACATCGATCCAGAGTATGCTCGAACTTCCCGACTTACTGAGAAGTCTGATGTTTACAGCTTTGGCATTGTGTTGCTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAACCTCCACCAATTGATCTTATCAAAGACAGCCAACAATGCTGTAATGGAGACAGCTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTTGCTCTCCTATGCACAAAGAGGCAGCCATCCGATCGACCAACAATGCACGAAGTAACGCGCGTCATCAGTAGTCTCCTTCCCTGTGCCACACCACTGAAGCCAACGCCAACCATAACATCCCTGCCTCCATCTGCAAAAGTCCCTTGCTACAAGGACGAGTATGCAAATCTAAAAACGCCACACGTGCTGAACTGCCCGTCCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAATTCGGAGAGGTTATATCACAAAACAGTGAGTAA 2976 43.82 MKSVKKAAMAFPVELVVLVFLFCATIAVVDSDDGATLLDIKKSFRDVDNVLYDWTSSPSSDYCIWRGVTCDNATLNVLSLNLSGLNLDGEISPSVGNLKGLQTLDLRGNRLSGQIPDEIGDCSSLINLDLSFNEIYGDIPFSISKLKQLGMLVLKNNRLIGPIPSTLSQVPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLSGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLMGIIPAEFGNLRSVMEIDISHNQLSGLIPQELSQLQNLLSLRLENNNLSGDVTSLINCLSLTELNVSYNSLAGDIPTSNNFSRFSSDSFLGNVALCGYWNSNNYPCHEVRTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMKAFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETADPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVISSLLPCATPLKPTPTITSLPPSAKVPCYKDEYANLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100037468 100044689 + Tan0015849.1 Tan01g3475 740899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3475 991 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 195 304 - -
Tan01g3475 991 SMART serkin_6 657 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3475 991 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 733 936 - -
Tan01g3475 991 CDD STKc_IRAK 663 928 - -
Tan01g3475 991 Gene3D Phosphorylase Kinase; domain 1 628 732 - -
Tan01g3475 991 Pfam Protein kinase domain 660 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3475 991 SUPERFAMILY RNI-like 211 546 - -
Tan01g3475 991 Pfam Leucine rich repeat 435 494 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 319 925 IPR051716 -
Tan01g3475 991 SUPERFAMILY L domain-like 31 266 - -
Tan01g3475 991 ProSiteProfiles Protein kinase domain profile. 657 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3475 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3475 991 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 305 578 - -
Tan01g3475 991 ProSitePatterns Protein kinases ATP-binding region signature. 663 686 IPR017441 GO:0005524(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 412 431 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 172 191 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 221 242 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 317 337 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 339 361 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 292 313 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 246 265 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 387 409 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Pfam Leucine Rich Repeat 101 122 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Gene3D Ribonuclease Inhibitor 30 194 IPR032675 -
Tan01g3475 991 SUPERFAMILY Protein kinase-like (PK-like) 635 923 IPR011009 -
Tan01g3475 991 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 30 194 - -
Tan01g3475 991 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 628 732 - -
Tan01g3475 991 Gene3D Ribonuclease Inhibitor 268 577 IPR032675 -
Tan01g3475 991 SMART LRR_typ_2 409 433 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 337 361 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 457 480 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 481 504 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 170 194 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 218 242 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 505 528 IPR003591 -
Tan01g3475 991 SMART LRR_typ_2 98 122 IPR003591 -
Tan01g3475 991 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Tan01g3475 991 Gene3D Transferase(Phosphotransferase) domain 1 733 932 - -
Tan01g3475 991 ProSiteProfiles Leucine-rich repeat profile. 172 194 IPR001611 GO:0005515(InterPro)
Tan01g3475 991 Gene3D Ribonuclease Inhibitor 195 267 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3475 Tan-Chr1:100037468 Tan01g3477 Tan-Chr1:100039036 6.70E-06 dispersed
Tan01g3475 Tan-Chr1:100037468 Tan01g3476 Tan-Chr1:100037468 1.20E-302 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67083 PF00069 Pkinase 5.40E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3475 K20718 - csv:101214398 1821.98